miRNA: 3'- -GGACGGuGA-CCUAgACAaa-----CGGGCAG- -5'
miRNA: 3'- -GGaCGG---UGACCUAGACaaaCG-GGCAG- -5'
miRNA: 3'- -GGAC-GGUGACCUa------GACAaaCGGGCAG- -5'
miRNA: 3'- -GGACGGUGACCUAGACAAACGGGCAG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12112 | 3' | -54.2 | NC_003309.1 | + | 24271 | 0.69 | 0.591564 |
|
Target: 5'- gCCUGCUuCUcGGGUgUGUcgauguaGCCCGUCa -3' miRNA: 3'- -GGACGGuGA-CCUAgACAaa-----CGGGCAG- -5' |
|||||||
| 12112 | 3' | -54.2 | NC_003309.1 | + | 19038 | 0.7 | 0.525974 |
|
Target: 5'- aUCgGCCguuGCUGGAUCUGc--GCgCCGUCg -3' miRNA: 3'- -GGaCGG---UGACCUAGACaaaCG-GGCAG- -5' |
|||||||
| 12112 | 3' | -54.2 | NC_003309.1 | + | 23940 | 0.74 | 0.310436 |
|
Target: 5'- aCUUGaUCGCUGGAcuggacgCUGUcgGCCCGUCg -3' miRNA: 3'- -GGAC-GGUGACCUa------GACAaaCGGGCAG- -5' |
|||||||
| 12112 | 3' | -54.2 | NC_003309.1 | + | 8223 | 1.12 | 0.000678 |
|
Target: 5'- cCCUGCCACUGGAUCUGUUUGCCCGUCg -3' miRNA: 3'- -GGACGGUGACCUAGACAAACGGGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home