miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12116 3' -61 NC_003309.1 + 5153 0.83 0.031029
Target:  5'- cUGCGcGUCGCCGCGCGccgCCGCgagCGCa -3'
miRNA:   3'- aGCGC-CAGCGGCGCGCaa-GGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 6535 0.67 0.402716
Target:  5'- aUCGCGG-CGCCaGCcuuGCucucggCCGCUUGCc -3'
miRNA:   3'- -AGCGCCaGCGG-CG---CGcaa---GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 8711 0.77 0.086546
Target:  5'- aUGCGGUCGCCGaC-CG-UCgGCUCGCg -3'
miRNA:   3'- aGCGCCAGCGGC-GcGCaAGgCGAGCG- -5'
12116 3' -61 NC_003309.1 + 8829 0.7 0.234118
Target:  5'- cCGCGcauUCGCUugcguguGCGCGUcgUCGCUCGCa -3'
miRNA:   3'- aGCGCc--AGCGG-------CGCGCAa-GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 9542 0.68 0.32882
Target:  5'- uUCGCGGaUCGaaCUGCGCG--CCGCgucgagCGCg -3'
miRNA:   3'- -AGCGCC-AGC--GGCGCGCaaGGCGa-----GCG- -5'
12116 3' -61 NC_003309.1 + 9709 0.75 0.119665
Target:  5'- -aGCGGUUGCCGUGUGUcgCgCGCgaugCGCa -3'
miRNA:   3'- agCGCCAGCGGCGCGCAa-G-GCGa---GCG- -5'
12116 3' -61 NC_003309.1 + 10305 0.72 0.177557
Target:  5'- aCGCuGUCGCCGCcuGCGUcgCCGCgacUGCg -3'
miRNA:   3'- aGCGcCAGCGGCG--CGCAa-GGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 10470 0.66 0.457473
Target:  5'- gCGCGcaUGCCGCGaGUUCgGCcugCGCu -3'
miRNA:   3'- aGCGCcaGCGGCGCgCAAGgCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 10599 0.67 0.368598
Target:  5'- uUCGCGcGU-GCCGuCGCGacaUgCGCUUGCg -3'
miRNA:   3'- -AGCGC-CAgCGGC-GCGCa--AgGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 10669 0.69 0.284709
Target:  5'- cUCGCGGgcgaugaUCGCCGCGUacggcaugcCCGCgaugCGCg -3'
miRNA:   3'- -AGCGCC-------AGCGGCGCGcaa------GGCGa---GCG- -5'
12116 3' -61 NC_003309.1 + 10890 1.11 0.00024
Target:  5'- gUCGCGGUCGCCGCGCGUUCCGCUCGCu -3'
miRNA:   3'- -AGCGCCAGCGGCGCGCAAGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 10934 0.67 0.368598
Target:  5'- gCGCcGUCGCCGCGCuUUCag-UCGCc -3'
miRNA:   3'- aGCGcCAGCGGCGCGcAAGgcgAGCG- -5'
12116 3' -61 NC_003309.1 + 11234 0.68 0.352298
Target:  5'- aCGCGGa--CUGCGCGUcgUCUGC-CGCg -3'
miRNA:   3'- aGCGCCagcGGCGCGCA--AGGCGaGCG- -5'
12116 3' -61 NC_003309.1 + 11738 0.66 0.438768
Target:  5'- aUGCGGaC-CUGCGCGU--CGUUCGCg -3'
miRNA:   3'- aGCGCCaGcGGCGCGCAagGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 11983 0.71 0.217734
Target:  5'- gCGCGGcagcCGCgGCGCGcgCCGCgUCGg -3'
miRNA:   3'- aGCGCCa---GCGgCGCGCaaGGCG-AGCg -5'
12116 3' -61 NC_003309.1 + 12068 0.66 0.433243
Target:  5'- aCGCGGgcCGCCGCggcguugguggauacGCGUgacgUCUGCgcCGCa -3'
miRNA:   3'- aGCGCCa-GCGGCG---------------CGCA----AGGCGa-GCG- -5'
12116 3' -61 NC_003309.1 + 12628 0.66 0.448067
Target:  5'- cCGCGcUCG-CGCGCGacCUGCUcCGCc -3'
miRNA:   3'- aGCGCcAGCgGCGCGCaaGGCGA-GCG- -5'
12116 3' -61 NC_003309.1 + 13801 0.7 0.252766
Target:  5'- aCGCGGuuguugUCGCCGcCGC-UUCCGCcgggcggcUCGCc -3'
miRNA:   3'- aGCGCC------AGCGGC-GCGcAAGGCG--------AGCG- -5'
12116 3' -61 NC_003309.1 + 15325 0.67 0.385407
Target:  5'- gCGaUGGcUGCUGCGCGUcggaugUCUGCUCGa -3'
miRNA:   3'- aGC-GCCaGCGGCGCGCA------AGGCGAGCg -5'
12116 3' -61 NC_003309.1 + 16115 0.71 0.212315
Target:  5'- cUGCGcUCGCacauCGCGCGaUCCGCUuCGCu -3'
miRNA:   3'- aGCGCcAGCG----GCGCGCaAGGCGA-GCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.