Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12116 | 3' | -61 | NC_003309.1 | + | 5153 | 0.83 | 0.031029 |
Target: 5'- cUGCGcGUCGCCGCGCGccgCCGCgagCGCa -3' miRNA: 3'- aGCGC-CAGCGGCGCGCaa-GGCGa--GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 6535 | 0.67 | 0.402716 |
Target: 5'- aUCGCGG-CGCCaGCcuuGCucucggCCGCUUGCc -3' miRNA: 3'- -AGCGCCaGCGG-CG---CGcaa---GGCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 8711 | 0.77 | 0.086546 |
Target: 5'- aUGCGGUCGCCGaC-CG-UCgGCUCGCg -3' miRNA: 3'- aGCGCCAGCGGC-GcGCaAGgCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 8829 | 0.7 | 0.234118 |
Target: 5'- cCGCGcauUCGCUugcguguGCGCGUcgUCGCUCGCa -3' miRNA: 3'- aGCGCc--AGCGG-------CGCGCAa-GGCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 9542 | 0.68 | 0.32882 |
Target: 5'- uUCGCGGaUCGaaCUGCGCG--CCGCgucgagCGCg -3' miRNA: 3'- -AGCGCC-AGC--GGCGCGCaaGGCGa-----GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 9709 | 0.75 | 0.119665 |
Target: 5'- -aGCGGUUGCCGUGUGUcgCgCGCgaugCGCa -3' miRNA: 3'- agCGCCAGCGGCGCGCAa-G-GCGa---GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10305 | 0.72 | 0.177557 |
Target: 5'- aCGCuGUCGCCGCcuGCGUcgCCGCgacUGCg -3' miRNA: 3'- aGCGcCAGCGGCG--CGCAa-GGCGa--GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10470 | 0.66 | 0.457473 |
Target: 5'- gCGCGcaUGCCGCGaGUUCgGCcugCGCu -3' miRNA: 3'- aGCGCcaGCGGCGCgCAAGgCGa--GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10599 | 0.67 | 0.368598 |
Target: 5'- uUCGCGcGU-GCCGuCGCGacaUgCGCUUGCg -3' miRNA: 3'- -AGCGC-CAgCGGC-GCGCa--AgGCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10669 | 0.69 | 0.284709 |
Target: 5'- cUCGCGGgcgaugaUCGCCGCGUacggcaugcCCGCgaugCGCg -3' miRNA: 3'- -AGCGCC-------AGCGGCGCGcaa------GGCGa---GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10890 | 1.11 | 0.00024 |
Target: 5'- gUCGCGGUCGCCGCGCGUUCCGCUCGCu -3' miRNA: 3'- -AGCGCCAGCGGCGCGCAAGGCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 10934 | 0.67 | 0.368598 |
Target: 5'- gCGCcGUCGCCGCGCuUUCag-UCGCc -3' miRNA: 3'- aGCGcCAGCGGCGCGcAAGgcgAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 11234 | 0.68 | 0.352298 |
Target: 5'- aCGCGGa--CUGCGCGUcgUCUGC-CGCg -3' miRNA: 3'- aGCGCCagcGGCGCGCA--AGGCGaGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 11738 | 0.66 | 0.438768 |
Target: 5'- aUGCGGaC-CUGCGCGU--CGUUCGCg -3' miRNA: 3'- aGCGCCaGcGGCGCGCAagGCGAGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 11983 | 0.71 | 0.217734 |
Target: 5'- gCGCGGcagcCGCgGCGCGcgCCGCgUCGg -3' miRNA: 3'- aGCGCCa---GCGgCGCGCaaGGCG-AGCg -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 12068 | 0.66 | 0.433243 |
Target: 5'- aCGCGGgcCGCCGCggcguugguggauacGCGUgacgUCUGCgcCGCa -3' miRNA: 3'- aGCGCCa-GCGGCG---------------CGCA----AGGCGa-GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 12628 | 0.66 | 0.448067 |
Target: 5'- cCGCGcUCG-CGCGCGacCUGCUcCGCc -3' miRNA: 3'- aGCGCcAGCgGCGCGCaaGGCGA-GCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 13801 | 0.7 | 0.252766 |
Target: 5'- aCGCGGuuguugUCGCCGcCGC-UUCCGCcgggcggcUCGCc -3' miRNA: 3'- aGCGCC------AGCGGC-GCGcAAGGCG--------AGCG- -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 15325 | 0.67 | 0.385407 |
Target: 5'- gCGaUGGcUGCUGCGCGUcggaugUCUGCUCGa -3' miRNA: 3'- aGC-GCCaGCGGCGCGCA------AGGCGAGCg -5' |
|||||||
12116 | 3' | -61 | NC_003309.1 | + | 16115 | 0.71 | 0.212315 |
Target: 5'- cUGCGcUCGCacauCGCGCGaUCCGCUuCGCu -3' miRNA: 3'- aGCGCcAGCG----GCGCGCaAGGCGA-GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home