miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12116 3' -61 NC_003309.1 + 17818 0.7 0.240599
Target:  5'- aUCGCGucggcgaucGUCGCCguguGCGCGUUCgGCgugauacggCGCa -3'
miRNA:   3'- -AGCGC---------CAGCGG----CGCGCAAGgCGa--------GCG- -5'
12116 3' -61 NC_003309.1 + 19491 0.67 0.382005
Target:  5'- gUCGCGauUCGgCGUGCGgcuguaccagaucUCCGUUCGCu -3'
miRNA:   3'- -AGCGCc-AGCgGCGCGCa------------AGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 19979 0.67 0.388829
Target:  5'- --aCGGUCGUgaucugcugcgccugCGCGCGaUCCGCUucgaCGCg -3'
miRNA:   3'- agcGCCAGCG---------------GCGCGCaAGGCGA----GCG- -5'
12116 3' -61 NC_003309.1 + 22386 0.72 0.186938
Target:  5'- cUGCGcGUCGaacgcCCGCGCGgcCUGCUCGUc -3'
miRNA:   3'- aGCGC-CAGC-----GGCGCGCaaGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 22730 0.73 0.163844
Target:  5'- cUCGCGcugaucGUCGCCGgcgacgccgaaaaCGCGUUCCGCaacCGCu -3'
miRNA:   3'- -AGCGC------CAGCGGC-------------GCGCAAGGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 23081 0.67 0.402716
Target:  5'- -gGCGGUCGCaugaaguacaGCGCcgccCCGCcCGCg -3'
miRNA:   3'- agCGCCAGCGg---------CGCGcaa-GGCGaGCG- -5'
12116 3' -61 NC_003309.1 + 23335 0.66 0.466985
Target:  5'- cCGUaGUCGUCGC-CGUUCCGaaCGUc -3'
miRNA:   3'- aGCGcCAGCGGCGcGCAAGGCgaGCG- -5'
12116 3' -61 NC_003309.1 + 27160 0.68 0.331883
Target:  5'- gCGcCGGcguugaccgUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCa -3'
miRNA:   3'- aGC-GCCa--------GCGGCGCG-C---------------AAGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 31922 0.76 0.104631
Target:  5'- cCGCGGccggCGCCaGCGCGUcuUuuGCUCGUc -3'
miRNA:   3'- aGCGCCa---GCGG-CGCGCA--AggCGAGCG- -5'
12116 3' -61 NC_003309.1 + 31999 0.7 0.258404
Target:  5'- cCGCGGcgUCGCaCGUcagccgcaaacugGCGcaagCCGCUCGCg -3'
miRNA:   3'- aGCGCC--AGCG-GCG-------------CGCaa--GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 39276 0.67 0.376939
Target:  5'- cUCGCGcaugcguugcGUCGCCaGCGCGcagcCCGCggaucagcaUCGCg -3'
miRNA:   3'- -AGCGC----------CAGCGG-CGCGCaa--GGCG---------AGCG- -5'
12116 3' -61 NC_003309.1 + 41373 0.68 0.321255
Target:  5'- -gGCGGgcaaGCCGCGUGgUUgGCUCGa -3'
miRNA:   3'- agCGCCag--CGGCGCGCaAGgCGAGCg -5'
12116 3' -61 NC_003309.1 + 44185 0.66 0.429581
Target:  5'- aCGCc--CGCgGCGCGcugCCGCUCGg -3'
miRNA:   3'- aGCGccaGCGgCGCGCaa-GGCGAGCg -5'
12116 3' -61 NC_003309.1 + 44507 0.66 0.429581
Target:  5'- -gGCGGccgaggCGCUGCGCuacuugUCCGgUCGUg -3'
miRNA:   3'- agCGCCa-----GCGGCGCGca----AGGCgAGCG- -5'
12116 3' -61 NC_003309.1 + 44853 0.7 0.265434
Target:  5'- -gGCGG-CGauCCGCGCaaggUUCGCUCGCu -3'
miRNA:   3'- agCGCCaGC--GGCGCGca--AGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 46615 0.67 0.375261
Target:  5'- gCGaagGGUCGacgacacagucaCGCGCG-UCaCGCUCGCg -3'
miRNA:   3'- aGCg--CCAGCg-----------GCGCGCaAG-GCGAGCG- -5'
12116 3' -61 NC_003309.1 + 46786 0.7 0.271958
Target:  5'- gCGUGGcCGCUGCGCGagCUGUcacCGCa -3'
miRNA:   3'- aGCGCCaGCGGCGCGCaaGGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 46959 0.66 0.420509
Target:  5'- gUGCcGUCGUCGUGCGaauggUCCGCaagugccagCGCg -3'
miRNA:   3'- aGCGcCAGCGGCGCGCa----AGGCGa--------GCG- -5'
12116 3' -61 NC_003309.1 + 48692 0.7 0.265434
Target:  5'- gCGCGaUCGCUGCGCuGcgcucccgaUUCCGCUCaGCc -3'
miRNA:   3'- aGCGCcAGCGGCGCG-C---------AAGGCGAG-CG- -5'
12116 3' -61 NC_003309.1 + 49860 0.72 0.188865
Target:  5'- gCGCGGuucggagcacguucuUCG-CGCGCGgcUCGCUCGCc -3'
miRNA:   3'- aGCGCC---------------AGCgGCGCGCaaGGCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.