miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12116 3' -61 NC_003309.1 + 9542 0.68 0.32882
Target:  5'- uUCGCGGaUCGaaCUGCGCG--CCGCgucgagCGCg -3'
miRNA:   3'- -AGCGCC-AGC--GGCGCGCaaGGCGa-----GCG- -5'
12116 3' -61 NC_003309.1 + 27160 0.68 0.331883
Target:  5'- gCGcCGGcguugaccgUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCa -3'
miRNA:   3'- aGC-GCCa--------GCGGCGCG-C---------------AAGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 11234 0.68 0.352298
Target:  5'- aCGCGGa--CUGCGCGUcgUCUGC-CGCg -3'
miRNA:   3'- aGCGCCagcGGCGCGCA--AGGCGaGCG- -5'
12116 3' -61 NC_003309.1 + 10934 0.67 0.368598
Target:  5'- gCGCcGUCGCCGCGCuUUCag-UCGCc -3'
miRNA:   3'- aGCGcCAGCGGCGCGcAAGgcgAGCG- -5'
12116 3' -61 NC_003309.1 + 10599 0.67 0.368598
Target:  5'- uUCGCGcGU-GCCGuCGCGacaUgCGCUUGCg -3'
miRNA:   3'- -AGCGC-CAgCGGC-GCGCa--AgGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 46615 0.67 0.375261
Target:  5'- gCGaagGGUCGacgacacagucaCGCGCG-UCaCGCUCGCg -3'
miRNA:   3'- aGCg--CCAGCg-----------GCGCGCaAG-GCGAGCG- -5'
12116 3' -61 NC_003309.1 + 39276 0.67 0.376939
Target:  5'- cUCGCGcaugcguugcGUCGCCaGCGCGcagcCCGCggaucagcaUCGCg -3'
miRNA:   3'- -AGCGC----------CAGCGG-CGCGCaa--GGCG---------AGCG- -5'
12116 3' -61 NC_003309.1 + 19491 0.67 0.382005
Target:  5'- gUCGCGauUCGgCGUGCGgcuguaccagaucUCCGUUCGCu -3'
miRNA:   3'- -AGCGCc-AGCgGCGCGCa------------AGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 15325 0.67 0.385407
Target:  5'- gCGaUGGcUGCUGCGCGUcggaugUCUGCUCGa -3'
miRNA:   3'- aGC-GCCaGCGGCGCGCA------AGGCGAGCg -5'
12116 3' -61 NC_003309.1 + 19979 0.67 0.388829
Target:  5'- --aCGGUCGUgaucugcugcgccugCGCGCGaUCCGCUucgaCGCg -3'
miRNA:   3'- agcGCCAGCG---------------GCGCGCaAGGCGA----GCG- -5'
12116 3' -61 NC_003309.1 + 23081 0.67 0.402716
Target:  5'- -gGCGGUCGCaugaaguacaGCGCcgccCCGCcCGCg -3'
miRNA:   3'- agCGCCAGCGg---------CGCGcaa-GGCGaGCG- -5'
12116 3' -61 NC_003309.1 + 6535 0.67 0.402716
Target:  5'- aUCGCGG-CGCCaGCcuuGCucucggCCGCUUGCc -3'
miRNA:   3'- -AGCGCCaGCGG-CG---CGcaa---GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 46959 0.66 0.420509
Target:  5'- gUGCcGUCGUCGUGCGaauggUCCGCaagugccagCGCg -3'
miRNA:   3'- aGCGcCAGCGGCGCGCa----AGGCGa--------GCG- -5'
12116 3' -61 NC_003309.1 + 44185 0.66 0.429581
Target:  5'- aCGCc--CGCgGCGCGcugCCGCUCGg -3'
miRNA:   3'- aGCGccaGCGgCGCGCaa-GGCGAGCg -5'
12116 3' -61 NC_003309.1 + 44507 0.66 0.429581
Target:  5'- -gGCGGccgaggCGCUGCGCuacuugUCCGgUCGUg -3'
miRNA:   3'- agCGCCa-----GCGGCGCGca----AGGCgAGCG- -5'
12116 3' -61 NC_003309.1 + 12068 0.66 0.433243
Target:  5'- aCGCGGgcCGCCGCggcguugguggauacGCGUgacgUCUGCgcCGCa -3'
miRNA:   3'- aGCGCCa-GCGGCG---------------CGCA----AGGCGa-GCG- -5'
12116 3' -61 NC_003309.1 + 11738 0.66 0.438768
Target:  5'- aUGCGGaC-CUGCGCGU--CGUUCGCg -3'
miRNA:   3'- aGCGCCaGcGGCGCGCAagGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 12628 0.66 0.448067
Target:  5'- cCGCGcUCG-CGCGCGacCUGCUcCGCc -3'
miRNA:   3'- aGCGCcAGCgGCGCGCaaGGCGA-GCG- -5'
12116 3' -61 NC_003309.1 + 10470 0.66 0.457473
Target:  5'- gCGCGcaUGCCGCGaGUUCgGCcugCGCu -3'
miRNA:   3'- aGCGCcaGCGGCGCgCAAGgCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 53260 0.66 0.457473
Target:  5'- cUCGCGcGccgucuUCGCCGCGUGacagUCacggcagauCGCUUGCa -3'
miRNA:   3'- -AGCGC-C------AGCGGCGCGCa---AG---------GCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.