miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12116 3' -61 NC_003309.1 + 11234 0.68 0.352298
Target:  5'- aCGCGGa--CUGCGCGUcgUCUGC-CGCg -3'
miRNA:   3'- aGCGCCagcGGCGCGCA--AGGCGaGCG- -5'
12116 3' -61 NC_003309.1 + 27160 0.68 0.331883
Target:  5'- gCGcCGGcguugaccgUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCa -3'
miRNA:   3'- aGC-GCCa--------GCGGCGCG-C---------------AAGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 10669 0.69 0.284709
Target:  5'- cUCGCGGgcgaugaUCGCCGCGUacggcaugcCCGCgaugCGCg -3'
miRNA:   3'- -AGCGCC-------AGCGGCGCGcaa------GGCGa---GCG- -5'
12116 3' -61 NC_003309.1 + 46786 0.7 0.271958
Target:  5'- gCGUGGcCGCUGCGCGagCUGUcacCGCa -3'
miRNA:   3'- aGCGCCaGCGGCGCGCaaGGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 48692 0.7 0.265434
Target:  5'- gCGCGaUCGCUGCGCuGcgcucccgaUUCCGCUCaGCc -3'
miRNA:   3'- aGCGCcAGCGGCGCG-C---------AAGGCGAG-CG- -5'
12116 3' -61 NC_003309.1 + 44853 0.7 0.265434
Target:  5'- -gGCGG-CGauCCGCGCaaggUUCGCUCGCu -3'
miRNA:   3'- agCGCCaGC--GGCGCGca--AGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 31999 0.7 0.258404
Target:  5'- cCGCGGcgUCGCaCGUcagccgcaaacugGCGcaagCCGCUCGCg -3'
miRNA:   3'- aGCGCC--AGCG-GCG-------------CGCaa--GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 13801 0.7 0.252766
Target:  5'- aCGCGGuuguugUCGCCGcCGC-UUCCGCcgggcggcUCGCc -3'
miRNA:   3'- aGCGCC------AGCGGC-GCGcAAGGCG--------AGCG- -5'
12116 3' -61 NC_003309.1 + 17818 0.7 0.240599
Target:  5'- aUCGCGucggcgaucGUCGCCguguGCGCGUUCgGCgugauacggCGCa -3'
miRNA:   3'- -AGCGC---------CAGCGG----CGCGCAAGgCGa--------GCG- -5'
12116 3' -61 NC_003309.1 + 8829 0.7 0.234118
Target:  5'- cCGCGcauUCGCUugcguguGCGCGUcgUCGCUCGCa -3'
miRNA:   3'- aGCGCc--AGCGG-------CGCGCAa-GGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 11983 0.71 0.217734
Target:  5'- gCGCGGcagcCGCgGCGCGcgCCGCgUCGg -3'
miRNA:   3'- aGCGCCa---GCGgCGCGCaaGGCG-AGCg -5'
12116 3' -61 NC_003309.1 + 16115 0.71 0.212315
Target:  5'- cUGCGcUCGCacauCGCGCGaUCCGCUuCGCu -3'
miRNA:   3'- aGCGCcAGCG----GCGCGCaAGGCGA-GCG- -5'
12116 3' -61 NC_003309.1 + 49860 0.72 0.188865
Target:  5'- gCGCGGuucggagcacguucuUCG-CGCGCGgcUCGCUCGCc -3'
miRNA:   3'- aGCGCC---------------AGCgGCGCGCaaGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 22386 0.72 0.186938
Target:  5'- cUGCGcGUCGaacgcCCGCGCGgcCUGCUCGUc -3'
miRNA:   3'- aGCGC-CAGC-----GGCGCGCaaGGCGAGCG- -5'
12116 3' -61 NC_003309.1 + 10305 0.72 0.177557
Target:  5'- aCGCuGUCGCCGCcuGCGUcgCCGCgacUGCg -3'
miRNA:   3'- aGCGcCAGCGGCG--CGCAa-GGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 22730 0.73 0.163844
Target:  5'- cUCGCGcugaucGUCGCCGgcgacgccgaaaaCGCGUUCCGCaacCGCu -3'
miRNA:   3'- -AGCGC------CAGCGGC-------------GCGCAAGGCGa--GCG- -5'
12116 3' -61 NC_003309.1 + 9709 0.75 0.119665
Target:  5'- -aGCGGUUGCCGUGUGUcgCgCGCgaugCGCa -3'
miRNA:   3'- agCGCCAGCGGCGCGCAa-G-GCGa---GCG- -5'
12116 3' -61 NC_003309.1 + 31922 0.76 0.104631
Target:  5'- cCGCGGccggCGCCaGCGCGUcuUuuGCUCGUc -3'
miRNA:   3'- aGCGCCa---GCGG-CGCGCA--AggCGAGCG- -5'
12116 3' -61 NC_003309.1 + 8711 0.77 0.086546
Target:  5'- aUGCGGUCGCCGaC-CG-UCgGCUCGCg -3'
miRNA:   3'- aGCGCCAGCGGC-GcGCaAGgCGAGCG- -5'
12116 3' -61 NC_003309.1 + 5153 0.83 0.031029
Target:  5'- cUGCGcGUCGCCGCGCGccgCCGCgagCGCa -3'
miRNA:   3'- aGCGC-CAGCGGCGCGCaa-GGCGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.