miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12117 5' -61.8 NC_003309.1 + 536 0.75 0.087591
Target:  5'- uUgCGCCGACCaggcGCUGCCGGCucGCCGg -3'
miRNA:   3'- uAgGUGGCUGG----CGGCGGUCGuuCGGC- -5'
12117 5' -61.8 NC_003309.1 + 884 0.68 0.279734
Target:  5'- -gCCAuCCGAagGUCGCCAuCAAGCCGa -3'
miRNA:   3'- uaGGU-GGCUggCGGCGGUcGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 1756 0.66 0.363231
Target:  5'- -gCCGCCGcCCGUCgaugucguGCCAGaaAAGCCGg -3'
miRNA:   3'- uaGGUGGCuGGCGG--------CGGUCg-UUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 3536 0.71 0.163504
Target:  5'- -aCgACUGAUCGCCGCgCAGCAGcCCGg -3'
miRNA:   3'- uaGgUGGCUGGCGGCG-GUCGUUcGGC- -5'
12117 5' -61.8 NC_003309.1 + 4695 0.66 0.346837
Target:  5'- uGUUCAUCG-CgGCCGC--GCGAGCCGa -3'
miRNA:   3'- -UAGGUGGCuGgCGGCGguCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 5147 0.66 0.338841
Target:  5'- -gUCGCCG-CgCGCCGCC-GCGAGCg- -3'
miRNA:   3'- uaGGUGGCuG-GCGGCGGuCGUUCGgc -5'
12117 5' -61.8 NC_003309.1 + 7482 0.71 0.171916
Target:  5'- --aCGCCGGCCGUCGCCAacccggcGCAuccuucuGCCGa -3'
miRNA:   3'- uagGUGGCUGGCGGCGGU-------CGUu------CGGC- -5'
12117 5' -61.8 NC_003309.1 + 7848 0.66 0.354148
Target:  5'- gAUCUgauaggaACCGgaACgGCCGCCAGUcAGCCc -3'
miRNA:   3'- -UAGG-------UGGC--UGgCGGCGGUCGuUCGGc -5'
12117 5' -61.8 NC_003309.1 + 7908 0.74 0.097814
Target:  5'- -aCgAUCGACUGCCaaGUCGGCAAGCCGa -3'
miRNA:   3'- uaGgUGGCUGGCGG--CGGUCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 8320 0.67 0.307469
Target:  5'- -gCCGUCGACCGagaauUCGCCcgggucgGGCAAGCCGa -3'
miRNA:   3'- uaGGUGGCUGGC-----GGCGG-------UCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 8893 0.69 0.217743
Target:  5'- cGUCguCCGagaacaGCCGCCGCCAGCcguCCGg -3'
miRNA:   3'- -UAGguGGC------UGGCGGCGGUCGuucGGC- -5'
12117 5' -61.8 NC_003309.1 + 9199 0.66 0.380154
Target:  5'- -cCCugCGacugaaacGCCGCCGCC-GCGAucaucGCCGc -3'
miRNA:   3'- uaGGugGC--------UGGCGGCGGuCGUU-----CGGC- -5'
12117 5' -61.8 NC_003309.1 + 9264 0.68 0.266299
Target:  5'- cUCCcuCCG-CCGUCGCgGGCucGCCGg -3'
miRNA:   3'- uAGGu-GGCuGGCGGCGgUCGuuCGGC- -5'
12117 5' -61.8 NC_003309.1 + 10253 0.67 0.315663
Target:  5'- gAUCCGCCca--GCCGCgAGCGAcacGCCGa -3'
miRNA:   3'- -UAGGUGGcuggCGGCGgUCGUU---CGGC- -5'
12117 5' -61.8 NC_003309.1 + 10315 0.68 0.253392
Target:  5'- --gCGCCGACCcacgcugucGCCGCCuGCGucGCCGc -3'
miRNA:   3'- uagGUGGCUGG---------CGGCGGuCGUu-CGGC- -5'
12117 5' -61.8 NC_003309.1 + 11007 1.07 0.000295
Target:  5'- aAUCCACCGACCGCCGCCAGCAAGCCGg -3'
miRNA:   3'- -UAGGUGGCUGGCGGCGGUCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 12679 0.7 0.191394
Target:  5'- uUCaCGCCGAcCCGCCagucgGCCugcaauGCGAGCCGc -3'
miRNA:   3'- uAG-GUGGCU-GGCGG-----CGGu-----CGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 14426 0.71 0.172369
Target:  5'- -gCCGUCGACCGUCGCCccgAGCuGGCCa -3'
miRNA:   3'- uaGGUGGCUGGCGGCGG---UCGuUCGGc -5'
12117 5' -61.8 NC_003309.1 + 15097 0.68 0.266299
Target:  5'- aAUCCGCCuGAgCGCguccuguaaCGCCgcauccgucucgAGCAAGCCGg -3'
miRNA:   3'- -UAGGUGG-CUgGCG---------GCGG------------UCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 17244 0.71 0.176961
Target:  5'- -aCCACCG-CCGCCGCCcuuCGcGCCGu -3'
miRNA:   3'- uaGGUGGCuGGCGGCGGuc-GUuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.