miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12117 5' -61.8 NC_003309.1 + 47057 0.66 0.346837
Target:  5'- -gCCAgcCCGACUGCUGCaucCGGCgAAGCUGg -3'
miRNA:   3'- uaGGU--GGCUGGCGGCG---GUCG-UUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 46322 0.67 0.308207
Target:  5'- -gCCGCCGuACCGCCG--AGCAcGGCCu -3'
miRNA:   3'- uaGGUGGC-UGGCGGCggUCGU-UCGGc -5'
12117 5' -61.8 NC_003309.1 + 45256 0.68 0.253392
Target:  5'- ---uGCCGGCCGCCGCguGC--GCCu -3'
miRNA:   3'- uaggUGGCUGGCGGCGguCGuuCGGc -5'
12117 5' -61.8 NC_003309.1 + 44444 0.73 0.109157
Target:  5'- cGUCgC-CCGGCCGaCUGCCGGCGAGCaCGc -3'
miRNA:   3'- -UAG-GuGGCUGGC-GGCGGUCGUUCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 43544 0.66 0.380154
Target:  5'- cGUCUGCaCGcGCaCGCCGUCGGC-GGCCa -3'
miRNA:   3'- -UAGGUG-GC-UG-GCGGCGGUCGuUCGGc -5'
12117 5' -61.8 NC_003309.1 + 43182 0.67 0.323254
Target:  5'- cGUCCGUCGcgcgaACCG-CGUCAGCGAGCCc -3'
miRNA:   3'- -UAGGUGGC-----UGGCgGCGGUCGUUCGGc -5'
12117 5' -61.8 NC_003309.1 + 35052 0.66 0.354967
Target:  5'- -aCCGaucCCGACCGagCGCCuguGCGAcGCCGa -3'
miRNA:   3'- uaGGU---GGCUGGCg-GCGGu--CGUU-CGGC- -5'
12117 5' -61.8 NC_003309.1 + 31931 0.71 0.167884
Target:  5'- cUUCGCCGcCCGCgGCCGGCGccAGCgCGu -3'
miRNA:   3'- uAGGUGGCuGGCGgCGGUCGU--UCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 31514 0.66 0.338841
Target:  5'- --aCGCCGGCCaGCCGaCGGC-GGCCu -3'
miRNA:   3'- uagGUGGCUGG-CGGCgGUCGuUCGGc -5'
12117 5' -61.8 NC_003309.1 + 31421 0.68 0.25978
Target:  5'- -gCUGgCGACCagugcgcaGCCGCCGGCGuGCCGu -3'
miRNA:   3'- uaGGUgGCUGG--------CGGCGGUCGUuCGGC- -5'
12117 5' -61.8 NC_003309.1 + 31220 0.7 0.201581
Target:  5'- -gCCACCGGCCGCaugcuugacgGCC-GCAGGCaCGa -3'
miRNA:   3'- uaGGUGGCUGGCGg---------CGGuCGUUCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 27749 0.66 0.354967
Target:  5'- -gCCAgaCGACgCGCCGCCcGGCGcaucGCCGa -3'
miRNA:   3'- uaGGUg-GCUG-GCGGCGG-UCGUu---CGGC- -5'
12117 5' -61.8 NC_003309.1 + 25208 0.72 0.139323
Target:  5'- -aCCACCGAUCgaauuGCCGCCAGCGGuCCc -3'
miRNA:   3'- uaGGUGGCUGG-----CGGCGGUCGUUcGGc -5'
12117 5' -61.8 NC_003309.1 + 24021 0.7 0.201581
Target:  5'- cUCCACCGcCCGUCGUCGacGCAgcugcAGCCa -3'
miRNA:   3'- uAGGUGGCuGGCGGCGGU--CGU-----UCGGc -5'
12117 5' -61.8 NC_003309.1 + 22730 0.79 0.044692
Target:  5'- cUCgCGCUGAUCGUCGCCGGCGAcGCCGa -3'
miRNA:   3'- uAG-GUGGCUGGCGGCGGUCGUU-CGGC- -5'
12117 5' -61.8 NC_003309.1 + 22610 0.72 0.135626
Target:  5'- -gCCACCGGCUGCCGUgcagugucggaCAGCGacgcgcAGCCGc -3'
miRNA:   3'- uaGGUGGCUGGCGGCG-----------GUCGU------UCGGC- -5'
12117 5' -61.8 NC_003309.1 + 22372 0.77 0.059264
Target:  5'- -cCCGCgCGGCCuGCuCGUCGGCAAGCCGa -3'
miRNA:   3'- uaGGUG-GCUGG-CG-GCGGUCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 22316 0.72 0.150974
Target:  5'- --gCGCCGGCCGCCauGCCAaGCAgcgcGGCCa -3'
miRNA:   3'- uagGUGGCUGGCGG--CGGU-CGU----UCGGc -5'
12117 5' -61.8 NC_003309.1 + 22058 0.68 0.25978
Target:  5'- ---aGCUcACCGCCGCC-GCGAGCUGa -3'
miRNA:   3'- uaggUGGcUGGCGGCGGuCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 19829 0.66 0.371627
Target:  5'- -aUCGCCGACUGCaacgaccagaCGCCGGCAuugAGCg- -3'
miRNA:   3'- uaGGUGGCUGGCG----------GCGGUCGU---UCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.