miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12117 5' -61.8 NC_003309.1 + 22058 0.68 0.25978
Target:  5'- ---aGCUcACCGCCGCC-GCGAGCUGa -3'
miRNA:   3'- uaggUGGcUGGCGGCGGuCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 10315 0.68 0.253392
Target:  5'- --gCGCCGACCcacgcugucGCCGCCuGCGucGCCGc -3'
miRNA:   3'- uagGUGGCUGG---------CGGCGGuCGUu-CGGC- -5'
12117 5' -61.8 NC_003309.1 + 45256 0.68 0.253392
Target:  5'- ---uGCCGGCCGCCGCguGC--GCCu -3'
miRNA:   3'- uaggUGGCUGGCGGCGguCGuuCGGc -5'
12117 5' -61.8 NC_003309.1 + 18563 0.69 0.229124
Target:  5'- -gCCACCGACCGagacggugCGCCuGCGccugcgacgugcAGCCGa -3'
miRNA:   3'- uaGGUGGCUGGCg-------GCGGuCGU------------UCGGC- -5'
12117 5' -61.8 NC_003309.1 + 8893 0.69 0.217743
Target:  5'- cGUCguCCGagaacaGCCGCCGCCAGCcguCCGg -3'
miRNA:   3'- -UAGguGGC------UGGCGGCGGUCGuucGGC- -5'
12117 5' -61.8 NC_003309.1 + 31220 0.7 0.201581
Target:  5'- -gCCACCGGCCGCaugcuugacgGCC-GCAGGCaCGa -3'
miRNA:   3'- uaGGUGGCUGGCGg---------CGGuCGUUCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 24021 0.7 0.201581
Target:  5'- cUCCACCGcCCGUCGUCGacGCAgcugcAGCCa -3'
miRNA:   3'- uAGGUGGCuGGCGGCGGU--CGU-----UCGGc -5'
12117 5' -61.8 NC_003309.1 + 12679 0.7 0.191394
Target:  5'- uUCaCGCCGAcCCGCCagucgGCCugcaauGCGAGCCGc -3'
miRNA:   3'- uAG-GUGGCU-GGCGG-----CGGu-----CGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 17244 0.71 0.176961
Target:  5'- -aCCACCG-CCGCCGCCcuuCGcGCCGu -3'
miRNA:   3'- uaGGUGGCuGGCGGCGGuc-GUuCGGC- -5'
12117 5' -61.8 NC_003309.1 + 14426 0.71 0.172369
Target:  5'- -gCCGUCGACCGUCGCCccgAGCuGGCCa -3'
miRNA:   3'- uaGGUGGCUGGCGGCGG---UCGuUCGGc -5'
12117 5' -61.8 NC_003309.1 + 7482 0.71 0.171916
Target:  5'- --aCGCCGGCCGUCGCCAacccggcGCAuccuucuGCCGa -3'
miRNA:   3'- uagGUGGCUGGCGGCGGU-------CGUu------CGGC- -5'
12117 5' -61.8 NC_003309.1 + 31931 0.71 0.167884
Target:  5'- cUUCGCCGcCCGCgGCCGGCGccAGCgCGu -3'
miRNA:   3'- uAGGUGGCuGGCGgCGGUCGU--UCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 3536 0.71 0.163504
Target:  5'- -aCgACUGAUCGCCGCgCAGCAGcCCGg -3'
miRNA:   3'- uaGgUGGCUGGCGGCG-GUCGUUcGGC- -5'
12117 5' -61.8 NC_003309.1 + 22316 0.72 0.150974
Target:  5'- --gCGCCGGCCGCCauGCCAaGCAgcgcGGCCa -3'
miRNA:   3'- uagGUGGCUGGCGG--CGGU-CGU----UCGGc -5'
12117 5' -61.8 NC_003309.1 + 25208 0.72 0.139323
Target:  5'- -aCCACCGAUCgaauuGCCGCCAGCGGuCCc -3'
miRNA:   3'- uaGGUGGCUGG-----CGGCGGUCGUUcGGc -5'
12117 5' -61.8 NC_003309.1 + 22610 0.72 0.135626
Target:  5'- -gCCACCGGCUGCCGUgcagugucggaCAGCGacgcgcAGCCGc -3'
miRNA:   3'- uaGGUGGCUGGCGGCG-----------GUCGU------UCGGC- -5'
12117 5' -61.8 NC_003309.1 + 44444 0.73 0.109157
Target:  5'- cGUCgC-CCGGCCGaCUGCCGGCGAGCaCGc -3'
miRNA:   3'- -UAG-GuGGCUGGC-GGCGGUCGUUCG-GC- -5'
12117 5' -61.8 NC_003309.1 + 7908 0.74 0.097814
Target:  5'- -aCgAUCGACUGCCaaGUCGGCAAGCCGa -3'
miRNA:   3'- uaGgUGGCUGGCGG--CGGUCGUUCGGC- -5'
12117 5' -61.8 NC_003309.1 + 536 0.75 0.087591
Target:  5'- uUgCGCCGACCaggcGCUGCCGGCucGCCGg -3'
miRNA:   3'- uAgGUGGCUGG----CGGCGGUCGuuCGGC- -5'
12117 5' -61.8 NC_003309.1 + 22372 0.77 0.059264
Target:  5'- -cCCGCgCGGCCuGCuCGUCGGCAAGCCGa -3'
miRNA:   3'- uaGGUG-GCUGG-CG-GCGGUCGUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.