Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12117 | 5' | -61.8 | NC_003309.1 | + | 9199 | 0.66 | 0.380154 |
Target: 5'- -cCCugCGacugaaacGCCGCCGCC-GCGAucaucGCCGc -3' miRNA: 3'- uaGGugGC--------UGGCGGCGGuCGUU-----CGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 43544 | 0.66 | 0.380154 |
Target: 5'- cGUCUGCaCGcGCaCGCCGUCGGC-GGCCa -3' miRNA: 3'- -UAGGUG-GC-UG-GCGGCGGUCGuUCGGc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 19829 | 0.66 | 0.371627 |
Target: 5'- -aUCGCCGACUGCaacgaccagaCGCCGGCAuugAGCg- -3' miRNA: 3'- uaGGUGGCUGGCG----------GCGGUCGU---UCGgc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 1756 | 0.66 | 0.363231 |
Target: 5'- -gCCGCCGcCCGUCgaugucguGCCAGaaAAGCCGg -3' miRNA: 3'- uaGGUGGCuGGCGG--------CGGUCg-UUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 35052 | 0.66 | 0.354967 |
Target: 5'- -aCCGaucCCGACCGagCGCCuguGCGAcGCCGa -3' miRNA: 3'- uaGGU---GGCUGGCg-GCGGu--CGUU-CGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 27749 | 0.66 | 0.354967 |
Target: 5'- -gCCAgaCGACgCGCCGCCcGGCGcaucGCCGa -3' miRNA: 3'- uaGGUg-GCUG-GCGGCGG-UCGUu---CGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 7848 | 0.66 | 0.354148 |
Target: 5'- gAUCUgauaggaACCGgaACgGCCGCCAGUcAGCCc -3' miRNA: 3'- -UAGG-------UGGC--UGgCGGCGGUCGuUCGGc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 4695 | 0.66 | 0.346837 |
Target: 5'- uGUUCAUCG-CgGCCGC--GCGAGCCGa -3' miRNA: 3'- -UAGGUGGCuGgCGGCGguCGUUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 47057 | 0.66 | 0.346837 |
Target: 5'- -gCCAgcCCGACUGCUGCaucCGGCgAAGCUGg -3' miRNA: 3'- uaGGU--GGCUGGCGGCG---GUCG-UUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 5147 | 0.66 | 0.338841 |
Target: 5'- -gUCGCCG-CgCGCCGCC-GCGAGCg- -3' miRNA: 3'- uaGGUGGCuG-GCGGCGGuCGUUCGgc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 31514 | 0.66 | 0.338841 |
Target: 5'- --aCGCCGGCCaGCCGaCGGC-GGCCu -3' miRNA: 3'- uagGUGGCUGG-CGGCgGUCGuUCGGc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 43182 | 0.67 | 0.323254 |
Target: 5'- cGUCCGUCGcgcgaACCG-CGUCAGCGAGCCc -3' miRNA: 3'- -UAGGUGGC-----UGGCgGCGGUCGUUCGGc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 18718 | 0.67 | 0.315663 |
Target: 5'- cGUCuCGCCGGCUGCgGCgCGGauacGGCCGc -3' miRNA: 3'- -UAG-GUGGCUGGCGgCG-GUCgu--UCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 10253 | 0.67 | 0.315663 |
Target: 5'- gAUCCGCCca--GCCGCgAGCGAcacGCCGa -3' miRNA: 3'- -UAGGUGGcuggCGGCGgUCGUU---CGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 46322 | 0.67 | 0.308207 |
Target: 5'- -gCCGCCGuACCGCCG--AGCAcGGCCu -3' miRNA: 3'- uaGGUGGC-UGGCGGCggUCGU-UCGGc -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 8320 | 0.67 | 0.307469 |
Target: 5'- -gCCGUCGACCGagaauUCGCCcgggucgGGCAAGCCGa -3' miRNA: 3'- uaGGUGGCUGGC-----GGCGG-------UCGUUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 884 | 0.68 | 0.279734 |
Target: 5'- -gCCAuCCGAagGUCGCCAuCAAGCCGa -3' miRNA: 3'- uaGGU-GGCUggCGGCGGUcGUUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 15097 | 0.68 | 0.266299 |
Target: 5'- aAUCCGCCuGAgCGCguccuguaaCGCCgcauccgucucgAGCAAGCCGg -3' miRNA: 3'- -UAGGUGG-CUgGCG---------GCGG------------UCGUUCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 9264 | 0.68 | 0.266299 |
Target: 5'- cUCCcuCCG-CCGUCGCgGGCucGCCGg -3' miRNA: 3'- uAGGu-GGCuGGCGGCGgUCGuuCGGC- -5' |
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12117 | 5' | -61.8 | NC_003309.1 | + | 22058 | 0.68 | 0.25978 |
Target: 5'- ---aGCUcACCGCCGCC-GCGAGCUGa -3' miRNA: 3'- uaggUGGcUGGCGGCGGuCGUUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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