Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12125 | 3' | -53 | NC_003309.1 | + | 3084 | 0.66 | 0.830911 |
Target: 5'- aCGAcuUGCCGG-CGUacuGCugGAUCGCc -3' miRNA: 3'- cGCUcuAUGGUCaGCG---CGugCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 4179 | 0.7 | 0.632186 |
Target: 5'- aGCGcGGAUgucguccGCCAGcucgaaCGCGC-CGGUCGCg -3' miRNA: 3'- -CGC-UCUA-------UGGUCa-----GCGCGuGCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 5062 | 0.66 | 0.848568 |
Target: 5'- gGCGcGGcgGCCGGUgcCGCGacgGCGGUCGg -3' miRNA: 3'- -CGC-UCuaUGGUCA--GCGCg--UGCUAGCg -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 5132 | 0.66 | 0.830911 |
Target: 5'- cGCGAGcgcacGUACCA--UGCGCGCcaucuUCGCg -3' miRNA: 3'- -CGCUC-----UAUGGUcaGCGCGUGcu---AGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 5201 | 0.66 | 0.865306 |
Target: 5'- cGCGAcuucuucGCCgaAGcCGCGCuCGAUCGCc -3' miRNA: 3'- -CGCUcua----UGG--UCaGCGCGuGCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 5409 | 0.66 | 0.848568 |
Target: 5'- uCGGGAUAUCGGUgucagcacCGauguaGCcgACGAUCGCg -3' miRNA: 3'- cGCUCUAUGGUCA--------GCg----CG--UGCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 5582 | 0.66 | 0.857056 |
Target: 5'- cGCGAauGAacGCCuugucuucgCGCGCGcCGAUCGCg -3' miRNA: 3'- -CGCU--CUa-UGGuca------GCGCGU-GCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 6044 | 0.68 | 0.742192 |
Target: 5'- cGCGAaucagcguCUGGUCGCGCugGAaUGCa -3' miRNA: 3'- -CGCUcuau----GGUCAGCGCGugCUaGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 9709 | 0.78 | 0.228089 |
Target: 5'- aGCGGu-UGCCGuguGUCGCGCGCGAUgCGCa -3' miRNA: 3'- -CGCUcuAUGGU---CAGCGCGUGCUA-GCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 10489 | 0.66 | 0.848568 |
Target: 5'- cGCGAG--GCUu-UCGCGCAuCGcgCGCa -3' miRNA: 3'- -CGCUCuaUGGucAGCGCGU-GCuaGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 12637 | 0.7 | 0.611157 |
Target: 5'- uCGAGAUaGCCGcGcUCGCGCGCGAccUGCu -3' miRNA: 3'- cGCUCUA-UGGU-C-AGCGCGUGCUa-GCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 15426 | 0.67 | 0.772178 |
Target: 5'- cGCGAGuguCCGGcgccggaacaccuUCGCGCcgACGAgaUCGCc -3' miRNA: 3'- -CGCUCuauGGUC-------------AGCGCG--UGCU--AGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 15907 | 0.66 | 0.830911 |
Target: 5'- cGCGcGGAUACUcugcgAGcgCGUGCGCcucGAUCGCc -3' miRNA: 3'- -CGC-UCUAUGG-----UCa-GCGCGUG---CUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 16215 | 0.67 | 0.783245 |
Target: 5'- cGCGAcAUaGCCGGcCG-GCGCGAacUCGCa -3' miRNA: 3'- -CGCUcUA-UGGUCaGCgCGUGCU--AGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 16287 | 1.15 | 0.000731 |
Target: 5'- aGCGAGAUACCAGUCGCGCACGAUCGCg -3' miRNA: 3'- -CGCUCUAUGGUCAGCGCGUGCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 16765 | 0.67 | 0.783245 |
Target: 5'- cGUGAGGccGCC-GUCGCGCGcCGA-CGUc -3' miRNA: 3'- -CGCUCUa-UGGuCAGCGCGU-GCUaGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 17035 | 0.66 | 0.864492 |
Target: 5'- cGCGAGcccgGCCuGUUGCggacugagcaucuGCACGAUgcCGCc -3' miRNA: 3'- -CGCUCua--UGGuCAGCG-------------CGUGCUA--GCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 18164 | 0.71 | 0.567178 |
Target: 5'- ---cGAUACCAGcUCGUcacagugacGCGCGAUUGCg -3' miRNA: 3'- cgcuCUAUGGUC-AGCG---------CGUGCUAGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 19296 | 0.68 | 0.742192 |
Target: 5'- aGCGcGuuuUCGG-CGCGCACGcgCGCg -3' miRNA: 3'- -CGCuCuauGGUCaGCGCGUGCuaGCG- -5' |
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12125 | 3' | -53 | NC_003309.1 | + | 19854 | 0.66 | 0.830911 |
Target: 5'- cGCGAcc-GCCAuGUCGCcCucgGCGAUCGCc -3' miRNA: 3'- -CGCUcuaUGGU-CAGCGcG---UGCUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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