miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12125 3' -53 NC_003309.1 + 19956 0.74 0.422733
Target:  5'- cGCGcGAU-CCGcuucGaCGCGCGCGAUCGCu -3'
miRNA:   3'- -CGCuCUAuGGU----CaGCGCGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 20058 0.66 0.848568
Target:  5'- cGCGAcacGCCcguucaGGUCgGCGUACGAcuUCGCg -3'
miRNA:   3'- -CGCUcuaUGG------UCAG-CGCGUGCU--AGCG- -5'
12125 3' -53 NC_003309.1 + 25681 0.67 0.812408
Target:  5'- uCGAccGAU-CCAcGUCGCGCA-GGUUGCg -3'
miRNA:   3'- cGCU--CUAuGGU-CAGCGCGUgCUAGCG- -5'
12125 3' -53 NC_003309.1 + 27822 0.78 0.24039
Target:  5'- uGCGAGA-ACCGGUCGCGCccuuuucggACGAguggCGUg -3'
miRNA:   3'- -CGCUCUaUGGUCAGCGCG---------UGCUa---GCG- -5'
12125 3' -53 NC_003309.1 + 28449 0.73 0.472018
Target:  5'- cCGAGGUugUcGUCGCGCACGuucaugUGCu -3'
miRNA:   3'- cGCUCUAugGuCAGCGCGUGCua----GCG- -5'
12125 3' -53 NC_003309.1 + 29268 0.66 0.865306
Target:  5'- aGCGAaauGUACCAGUgGCGgACaugCGCc -3'
miRNA:   3'- -CGCUc--UAUGGUCAgCGCgUGcuaGCG- -5'
12125 3' -53 NC_003309.1 + 32312 0.66 0.821761
Target:  5'- aGCGAGAUGCCgagcGGUauCGCACGcacAUCa- -3'
miRNA:   3'- -CGCUCUAUGG----UCAgcGCGUGC---UAGcg -5'
12125 3' -53 NC_003309.1 + 33063 0.68 0.720944
Target:  5'- cGCGuucGAUuauuGCgAcUCGCGCACGAUCGa -3'
miRNA:   3'- -CGCu--CUA----UGgUcAGCGCGUGCUAGCg -5'
12125 3' -53 NC_003309.1 + 37334 0.68 0.752654
Target:  5'- aUGAGAUcACgGGcgucuaccUGCGCGCGAUCGUg -3'
miRNA:   3'- cGCUCUA-UGgUCa-------GCGCGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 39243 0.66 0.825445
Target:  5'- cGCGG---AUCAGcaUCGCGCACGAaggucgacgaagugcUCGCc -3'
miRNA:   3'- -CGCUcuaUGGUC--AGCGCGUGCU---------------AGCG- -5'
12125 3' -53 NC_003309.1 + 40117 0.71 0.556295
Target:  5'- aGCGAGAacAUCGGUCGCGCccaugcaauGCGGcaCGCg -3'
miRNA:   3'- -CGCUCUa-UGGUCAGCGCG---------UGCUa-GCG- -5'
12125 3' -53 NC_003309.1 + 40481 0.67 0.783245
Target:  5'- gGCGAGGgaGCCAGagGaCGCcggaguUGGUCGCg -3'
miRNA:   3'- -CGCUCUa-UGGUCagC-GCGu-----GCUAGCG- -5'
12125 3' -53 NC_003309.1 + 43429 0.73 0.432344
Target:  5'- cGCGAGAUugaacagcACCuGUgCGUGCugGAagaUCGCg -3'
miRNA:   3'- -CGCUCUA--------UGGuCA-GCGCGugCU---AGCG- -5'
12125 3' -53 NC_003309.1 + 43536 0.68 0.752654
Target:  5'- cGCGcacgccgucGGcgGCCA-UCGCGCGCaucaGGUCGCg -3'
miRNA:   3'- -CGC---------UCuaUGGUcAGCGCGUG----CUAGCG- -5'
12125 3' -53 NC_003309.1 + 44782 0.71 0.567178
Target:  5'- cCGGGAUACCGa--GCGCGCGAg-GCa -3'
miRNA:   3'- cGCUCUAUGGUcagCGCGUGCUagCG- -5'
12125 3' -53 NC_003309.1 + 45362 0.66 0.821761
Target:  5'- uCGGGAaACCGG-CGCGCGaucucUCGCa -3'
miRNA:   3'- cGCUCUaUGGUCaGCGCGUgcu--AGCG- -5'
12125 3' -53 NC_003309.1 + 47937 0.68 0.720944
Target:  5'- uGCGAccGAUAguUCGgucGUCGCGCACGcgUGCc -3'
miRNA:   3'- -CGCU--CUAU--GGU---CAGCGCGUGCuaGCG- -5'
12125 3' -53 NC_003309.1 + 48725 0.71 0.578113
Target:  5'- aGCGAaucaucaggucGAcUGCCAaugccgCGUGCGCGAUCGCu -3'
miRNA:   3'- -CGCU-----------CU-AUGGUca----GCGCGUGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.