miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12125 3' -53 NC_003309.1 + 47937 0.68 0.720944
Target:  5'- uGCGAccGAUAguUCGgucGUCGCGCACGcgUGCc -3'
miRNA:   3'- -CGCU--CUAU--GGU---CAGCGCGUGCuaGCG- -5'
12125 3' -53 NC_003309.1 + 33063 0.68 0.720944
Target:  5'- cGCGuucGAUuauuGCgAcUCGCGCACGAUCGa -3'
miRNA:   3'- -CGCu--CUA----UGgUcAGCGCGUGCUAGCg -5'
12125 3' -53 NC_003309.1 + 19296 0.68 0.742192
Target:  5'- aGCGcGuuuUCGG-CGCGCACGcgCGCg -3'
miRNA:   3'- -CGCuCuauGGUCaGCGCGUGCuaGCG- -5'
12125 3' -53 NC_003309.1 + 6044 0.68 0.742192
Target:  5'- cGCGAaucagcguCUGGUCGCGCugGAaUGCa -3'
miRNA:   3'- -CGCUcuau----GGUCAGCGCGugCUaGCG- -5'
12125 3' -53 NC_003309.1 + 43536 0.68 0.752654
Target:  5'- cGCGcacgccgucGGcgGCCA-UCGCGCGCaucaGGUCGCg -3'
miRNA:   3'- -CGC---------UCuaUGGUcAGCGCGUG----CUAGCG- -5'
12125 3' -53 NC_003309.1 + 37334 0.68 0.752654
Target:  5'- aUGAGAUcACgGGcgucuaccUGCGCGCGAUCGUg -3'
miRNA:   3'- cGCUCUA-UGgUCa-------GCGCGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 4179 0.7 0.632186
Target:  5'- aGCGcGGAUgucguccGCCAGcucgaaCGCGC-CGGUCGCg -3'
miRNA:   3'- -CGC-UCUA-------UGGUCa-----GCGCGuGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 12637 0.7 0.611157
Target:  5'- uCGAGAUaGCCGcGcUCGCGCGCGAccUGCu -3'
miRNA:   3'- cGCUCUA-UGGU-C-AGCGCGUGCUa-GCG- -5'
12125 3' -53 NC_003309.1 + 40117 0.71 0.556295
Target:  5'- aGCGAGAacAUCGGUCGCGCccaugcaauGCGGcaCGCg -3'
miRNA:   3'- -CGCUCUa-UGGUCAGCGCG---------UGCUa-GCG- -5'
12125 3' -53 NC_003309.1 + 18164 0.71 0.567178
Target:  5'- ---cGAUACCAGcUCGUcacagugacGCGCGAUUGCg -3'
miRNA:   3'- cgcuCUAUGGUC-AGCG---------CGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 44782 0.71 0.567178
Target:  5'- cCGGGAUACCGa--GCGCGCGAg-GCa -3'
miRNA:   3'- cGCUCUAUGGUcagCGCGUGCUagCG- -5'
12125 3' -53 NC_003309.1 + 48725 0.71 0.578113
Target:  5'- aGCGAaucaucaggucGAcUGCCAaugccgCGUGCGCGAUCGCu -3'
miRNA:   3'- -CGCU-----------CU-AUGGUca----GCGCGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 28449 0.73 0.472018
Target:  5'- cCGAGGUugUcGUCGCGCACGuucaugUGCu -3'
miRNA:   3'- cGCUCUAugGuCAGCGCGUGCua----GCG- -5'
12125 3' -53 NC_003309.1 + 43429 0.73 0.432344
Target:  5'- cGCGAGAUugaacagcACCuGUgCGUGCugGAagaUCGCg -3'
miRNA:   3'- -CGCUCUA--------UGGuCA-GCGCGugCU---AGCG- -5'
12125 3' -53 NC_003309.1 + 19956 0.74 0.422733
Target:  5'- cGCGcGAU-CCGcuucGaCGCGCGCGAUCGCu -3'
miRNA:   3'- -CGCuCUAuGGU----CaGCGCGUGCUAGCG- -5'
12125 3' -53 NC_003309.1 + 27822 0.78 0.24039
Target:  5'- uGCGAGA-ACCGGUCGCGCccuuuucggACGAguggCGUg -3'
miRNA:   3'- -CGCUCUaUGGUCAGCGCG---------UGCUa---GCG- -5'
12125 3' -53 NC_003309.1 + 9709 0.78 0.228089
Target:  5'- aGCGGu-UGCCGuguGUCGCGCGCGAUgCGCa -3'
miRNA:   3'- -CGCUcuAUGGU---CAGCGCGUGCUA-GCG- -5'
12125 3' -53 NC_003309.1 + 16287 1.15 0.000731
Target:  5'- aGCGAGAUACCAGUCGCGCACGAUCGCg -3'
miRNA:   3'- -CGCUCUAUGGUCAGCGCGUGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.