miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12126 5' -63.8 NC_003309.1 + 16549 1.06 0.000259
Target:  5'- aUCCCGCCCCACACCGCGCGCGUCGAUa -3'
miRNA:   3'- -AGGGCGGGGUGUGGCGCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 10061 0.75 0.063444
Target:  5'- aUCCGUgCCGCccGCCGCGCGCGUCa-- -3'
miRNA:   3'- aGGGCGgGGUG--UGGCGCGCGCAGcua -5'
12126 5' -63.8 NC_003309.1 + 22412 0.74 0.083373
Target:  5'- aUCuuGCCCaacgcuucggCAUGCCGCuGCGCGUCGAa -3'
miRNA:   3'- -AGggCGGG----------GUGUGGCG-CGCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 47343 0.72 0.112147
Target:  5'- aCUCGCggCgCACGCCGCGCGgGUUGAUg -3'
miRNA:   3'- aGGGCG--GgGUGUGGCGCGCgCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 45098 0.72 0.115182
Target:  5'- cCCUGCCacgaCCACACCGCGUaaccGCgGUCGAUc -3'
miRNA:   3'- aGGGCGG----GGUGUGGCGCG----CG-CAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 18991 0.72 0.121483
Target:  5'- gCCCGgCUCAUACUGUGuCGCGUUGAUc -3'
miRNA:   3'- aGGGCgGGGUGUGGCGC-GCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 45909 0.71 0.127089
Target:  5'- gCCCGCCUCGauCAguugacgguucagcUCGCGCGCGUUGAUc -3'
miRNA:   3'- aGGGCGGGGU--GU--------------GGCGCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 32991 0.71 0.142352
Target:  5'- aUCCGCaucuucgcagCCCGCACCGCGCGCugaggcgCGAg -3'
miRNA:   3'- aGGGCG----------GGGUGUGGCGCGCGca-----GCUa -5'
12126 5' -63.8 NC_003309.1 + 171 0.7 0.150009
Target:  5'- uUCCCGCCgCGauuuuCCGCGC-CGUCGGc -3'
miRNA:   3'- -AGGGCGGgGUgu---GGCGCGcGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 39969 0.7 0.150009
Target:  5'- gUCUGCCUCGCGgCGCGCuuGUCGAg -3'
miRNA:   3'- aGGGCGGGGUGUgGCGCGcgCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 32566 0.7 0.153976
Target:  5'- aCCUGCUCUACGCCGaCGCaaaguCGUCGAc -3'
miRNA:   3'- aGGGCGGGGUGUGGC-GCGc----GCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 12889 0.7 0.169493
Target:  5'- -aUCGCUCCGaacaccugagacauCGCCGCGCGCGcCGAa -3'
miRNA:   3'- agGGCGGGGU--------------GUGGCGCGCGCaGCUa -5'
12126 5' -63.8 NC_003309.1 + 37295 0.69 0.179831
Target:  5'- --aCGCCCUgaaucuCGCCG-GCGCGUCGAUg -3'
miRNA:   3'- aggGCGGGGu-----GUGGCgCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 42153 0.69 0.189272
Target:  5'- aCCgGCCCC-UGCCcagcucggaaGCGCGCGUUGAc -3'
miRNA:   3'- aGGgCGGGGuGUGG----------CGCGCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 10185 0.67 0.242616
Target:  5'- uUCCCugcgcaaGCCUCGCGCuCGCGCcCGUCGc- -3'
miRNA:   3'- -AGGG-------CGGGGUGUG-GCGCGcGCAGCua -5'
12126 5' -63.8 NC_003309.1 + 9970 0.67 0.24926
Target:  5'- cUCuuG-CCCAUGCCGCGCGCGa---- -3'
miRNA:   3'- -AGggCgGGGUGUGGCGCGCGCagcua -5'
12126 5' -63.8 NC_003309.1 + 47610 0.67 0.24926
Target:  5'- gUCCUGCCCgGucguCGCCGCGC-CGUCc-- -3'
miRNA:   3'- -AGGGCGGGgU----GUGGCGCGcGCAGcua -5'
12126 5' -63.8 NC_003309.1 + 12685 0.67 0.24926
Target:  5'- gCCCGCUUCACGCCGaCcCGCcaGUCGGc -3'
miRNA:   3'- aGGGCGGGGUGUGGC-GcGCG--CAGCUa -5'
12126 5' -63.8 NC_003309.1 + 13019 0.67 0.25543
Target:  5'- gCCCGguCCCCACACCGCccCGCcuGUCGc- -3'
miRNA:   3'- aGGGC--GGGGUGUGGCGc-GCG--CAGCua -5'
12126 5' -63.8 NC_003309.1 + 11996 0.67 0.257933
Target:  5'- gCCUGCugCCCGCGCgcggcagccgcggcgCGCGcCGCGUCGGc -3'
miRNA:   3'- aGGGCG--GGGUGUG---------------GCGC-GCGCAGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.