miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12126 5' -63.8 NC_003309.1 + 171 0.7 0.150009
Target:  5'- uUCCCGCCgCGauuuuCCGCGC-CGUCGGc -3'
miRNA:   3'- -AGGGCGGgGUgu---GGCGCGcGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 9970 0.67 0.24926
Target:  5'- cUCuuG-CCCAUGCCGCGCGCGa---- -3'
miRNA:   3'- -AGggCgGGGUGUGGCGCGCGCagcua -5'
12126 5' -63.8 NC_003309.1 + 10061 0.75 0.063444
Target:  5'- aUCCGUgCCGCccGCCGCGCGCGUCa-- -3'
miRNA:   3'- aGGGCGgGGUG--UGGCGCGCGCAGcua -5'
12126 5' -63.8 NC_003309.1 + 10185 0.67 0.242616
Target:  5'- uUCCCugcgcaaGCCUCGCGCuCGCGCcCGUCGc- -3'
miRNA:   3'- -AGGG-------CGGGGUGUG-GCGCGcGCAGCua -5'
12126 5' -63.8 NC_003309.1 + 10441 0.66 0.281366
Target:  5'- -gCCGCCUC-CGCCGCcuGCGCGUUu-- -3'
miRNA:   3'- agGGCGGGGuGUGGCG--CGCGCAGcua -5'
12126 5' -63.8 NC_003309.1 + 10656 0.66 0.316668
Target:  5'- aUCgCCGCguacggcaugCCCGCGauGCGCGCGcCGAUu -3'
miRNA:   3'- -AG-GGCG----------GGGUGUggCGCGCGCaGCUA- -5'
12126 5' -63.8 NC_003309.1 + 11745 0.66 0.316668
Target:  5'- cCCCGCCaugCGgACC-UGCGCGUCGu- -3'
miRNA:   3'- aGGGCGGg--GUgUGGcGCGCGCAGCua -5'
12126 5' -63.8 NC_003309.1 + 11996 0.67 0.257933
Target:  5'- gCCUGCugCCCGCGCgcggcagccgcggcgCGCGcCGCGUCGGc -3'
miRNA:   3'- aGGGCG--GGGUGUG---------------GCGC-GCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 12613 0.66 0.288168
Target:  5'- aCCUGCUCCGCcucgGCCGUGUugauGCGcUCGAUc -3'
miRNA:   3'- aGGGCGGGGUG----UGGCGCG----CGC-AGCUA- -5'
12126 5' -63.8 NC_003309.1 + 12685 0.67 0.24926
Target:  5'- gCCCGCUUCACGCCGaCcCGCcaGUCGGc -3'
miRNA:   3'- aGGGCGGGGUGUGGC-GcGCG--CAGCUa -5'
12126 5' -63.8 NC_003309.1 + 12889 0.7 0.169493
Target:  5'- -aUCGCUCCGaacaccugagacauCGCCGCGCGCGcCGAa -3'
miRNA:   3'- agGGCGGGGU--------------GUGGCGCGCGCaGCUa -5'
12126 5' -63.8 NC_003309.1 + 13019 0.67 0.25543
Target:  5'- gCCCGguCCCCACACCGCccCGCcuGUCGc- -3'
miRNA:   3'- aGGGC--GGGGUGUGGCGc-GCG--CAGCua -5'
12126 5' -63.8 NC_003309.1 + 14148 0.66 0.316668
Target:  5'- cCUCGUCCCACaucaucuuGCCGCGCuCGgCGAc -3'
miRNA:   3'- aGGGCGGGGUG--------UGGCGCGcGCaGCUa -5'
12126 5' -63.8 NC_003309.1 + 15345 0.67 0.274032
Target:  5'- gUCCCcCaCCCGCagcgucggcgaugGCUGCuGCGCGUCGGa -3'
miRNA:   3'- -AGGGcG-GGGUG-------------UGGCG-CGCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 16549 1.06 0.000259
Target:  5'- aUCCCGCCCCACACCGCGCGCGUCGAUa -3'
miRNA:   3'- -AGGGCGGGGUGUGGCGCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 16958 0.66 0.295099
Target:  5'- aUgCGCCCCACgGCUGCGCGaaaccgaaCGUCGc- -3'
miRNA:   3'- aGgGCGGGGUG-UGGCGCGC--------GCAGCua -5'
12126 5' -63.8 NC_003309.1 + 17319 0.67 0.268145
Target:  5'- cCCCGCCgagaUCACAucgagcaccuUCGCGCGCGcaaUCGAa -3'
miRNA:   3'- aGGGCGG----GGUGU----------GGCGCGCGC---AGCUa -5'
12126 5' -63.8 NC_003309.1 + 18879 0.67 0.274692
Target:  5'- aUCCacacagCGCCCgGCACCG-GaucaGCGUCGAa -3'
miRNA:   3'- -AGG------GCGGGgUGUGGCgCg---CGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 18991 0.72 0.121483
Target:  5'- gCCCGgCUCAUACUGUGuCGCGUUGAUc -3'
miRNA:   3'- aGGGCgGGGUGUGGCGC-GCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 22412 0.74 0.083373
Target:  5'- aUCuuGCCCaacgcuucggCAUGCCGCuGCGCGUCGAa -3'
miRNA:   3'- -AGggCGGG----------GUGUGGCG-CGCGCAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.