miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12126 5' -63.8 NC_003309.1 + 22699 0.66 0.302159
Target:  5'- aCgCGUUCCGCaACCGC-UGCGUCGAc -3'
miRNA:   3'- aGgGCGGGGUG-UGGCGcGCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 25392 0.66 0.288168
Target:  5'- cCUCGUgCCACugCGUGUagccgucgGCGUCGGUc -3'
miRNA:   3'- aGGGCGgGGUGugGCGCG--------CGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 32566 0.7 0.153976
Target:  5'- aCCUGCUCUACGCCGaCGCaaaguCGUCGAc -3'
miRNA:   3'- aGGGCGGGGUGUGGC-GCGc----GCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 32991 0.71 0.142352
Target:  5'- aUCCGCaucuucgcagCCCGCACCGCGCGCugaggcgCGAg -3'
miRNA:   3'- aGGGCG----------GGGUGUGGCGCGCGca-----GCUa -5'
12126 5' -63.8 NC_003309.1 + 37295 0.69 0.179831
Target:  5'- --aCGCCCUgaaucuCGCCG-GCGCGUCGAUg -3'
miRNA:   3'- aggGCGGGGu-----GUGGCgCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 37970 0.67 0.261725
Target:  5'- -aCCGCaguucCCCGCucGCCGCGCGCGg-GAUu -3'
miRNA:   3'- agGGCG-----GGGUG--UGGCGCGCGCagCUA- -5'
12126 5' -63.8 NC_003309.1 + 39969 0.7 0.150009
Target:  5'- gUCUGCCUCGCGgCGCGCuuGUCGAg -3'
miRNA:   3'- aGGGCGGGGUGUgGCGCGcgCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 42153 0.69 0.189272
Target:  5'- aCCgGCCCC-UGCCcagcucggaaGCGCGCGUUGAc -3'
miRNA:   3'- aGGgCGGGGuGUGG----------CGCGCGCAGCUa -5'
12126 5' -63.8 NC_003309.1 + 45098 0.72 0.115182
Target:  5'- cCCUGCCacgaCCACACCGCGUaaccGCgGUCGAUc -3'
miRNA:   3'- aGGGCGG----GGUGUGGCGCG----CG-CAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 45909 0.71 0.127089
Target:  5'- gCCCGCCUCGauCAguugacgguucagcUCGCGCGCGUUGAUc -3'
miRNA:   3'- aGGGCGGGGU--GU--------------GGCGCGCGCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 47343 0.72 0.112147
Target:  5'- aCUCGCggCgCACGCCGCGCGgGUUGAUg -3'
miRNA:   3'- aGGGCG--GgGUGUGGCGCGCgCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 47565 0.66 0.288168
Target:  5'- cCCCGUCCa--GCCGCGCaauaccgcuuCGUCGAUg -3'
miRNA:   3'- aGGGCGGGgugUGGCGCGc---------GCAGCUA- -5'
12126 5' -63.8 NC_003309.1 + 47610 0.67 0.24926
Target:  5'- gUCCUGCCCgGucguCGCCGCGC-CGUCc-- -3'
miRNA:   3'- -AGGGCGGGgU----GUGGCGCGcGCAGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.