Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12126 | 5' | -63.8 | NC_003309.1 | + | 37295 | 0.69 | 0.179831 |
Target: 5'- --aCGCCCUgaaucuCGCCG-GCGCGUCGAUg -3' miRNA: 3'- aggGCGGGGu-----GUGGCgCGCGCAGCUA- -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 171 | 0.7 | 0.150009 |
Target: 5'- uUCCCGCCgCGauuuuCCGCGC-CGUCGGc -3' miRNA: 3'- -AGGGCGGgGUgu---GGCGCGcGCAGCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 39969 | 0.7 | 0.150009 |
Target: 5'- gUCUGCCUCGCGgCGCGCuuGUCGAg -3' miRNA: 3'- aGGGCGGGGUGUgGCGCGcgCAGCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 32566 | 0.7 | 0.153976 |
Target: 5'- aCCUGCUCUACGCCGaCGCaaaguCGUCGAc -3' miRNA: 3'- aGGGCGGGGUGUGGC-GCGc----GCAGCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 12889 | 0.7 | 0.169493 |
Target: 5'- -aUCGCUCCGaacaccugagacauCGCCGCGCGCGcCGAa -3' miRNA: 3'- agGGCGGGGU--------------GUGGCGCGCGCaGCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 32991 | 0.71 | 0.142352 |
Target: 5'- aUCCGCaucuucgcagCCCGCACCGCGCGCugaggcgCGAg -3' miRNA: 3'- aGGGCG----------GGGUGUGGCGCGCGca-----GCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 45909 | 0.71 | 0.127089 |
Target: 5'- gCCCGCCUCGauCAguugacgguucagcUCGCGCGCGUUGAUc -3' miRNA: 3'- aGGGCGGGGU--GU--------------GGCGCGCGCAGCUA- -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 18991 | 0.72 | 0.121483 |
Target: 5'- gCCCGgCUCAUACUGUGuCGCGUUGAUc -3' miRNA: 3'- aGGGCgGGGUGUGGCGC-GCGCAGCUA- -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 45098 | 0.72 | 0.115182 |
Target: 5'- cCCUGCCacgaCCACACCGCGUaaccGCgGUCGAUc -3' miRNA: 3'- aGGGCGG----GGUGUGGCGCG----CG-CAGCUA- -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 47343 | 0.72 | 0.112147 |
Target: 5'- aCUCGCggCgCACGCCGCGCGgGUUGAUg -3' miRNA: 3'- aGGGCG--GgGUGUGGCGCGCgCAGCUA- -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 22412 | 0.74 | 0.083373 |
Target: 5'- aUCuuGCCCaacgcuucggCAUGCCGCuGCGCGUCGAa -3' miRNA: 3'- -AGggCGGG----------GUGUGGCG-CGCGCAGCUa -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 10061 | 0.75 | 0.063444 |
Target: 5'- aUCCGUgCCGCccGCCGCGCGCGUCa-- -3' miRNA: 3'- aGGGCGgGGUG--UGGCGCGCGCAGcua -5' |
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12126 | 5' | -63.8 | NC_003309.1 | + | 16549 | 1.06 | 0.000259 |
Target: 5'- aUCCCGCCCCACACCGCGCGCGUCGAUa -3' miRNA: 3'- -AGGGCGGGGUGUGGCGCGCGCAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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