Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12127 | 3' | -60.5 | NC_003309.1 | + | 16711 | 1.11 | 0.000222 |
Target: 5'- cACCGACAGCGCGCGCACCGCCUUCGCg -3' miRNA: 3'- -UGGCUGUCGCGCGCGUGGCGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 4910 | 0.8 | 0.04437 |
Target: 5'- gACCGACAGCGC-CGUACCGCCcaccUCGa -3' miRNA: 3'- -UGGCUGUCGCGcGCGUGGCGGa---AGCg -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 7362 | 0.78 | 0.067641 |
Target: 5'- cACCaGcCAGCGuCGCGCGCCuaagcGCCUUCGCc -3' miRNA: 3'- -UGG-CuGUCGC-GCGCGUGG-----CGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 53271 | 0.78 | 0.071521 |
Target: 5'- cACCGcaACcGCuCGCGCGCCGUCUUCGCc -3' miRNA: 3'- -UGGC--UGuCGcGCGCGUGGCGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 16919 | 0.77 | 0.086856 |
Target: 5'- cGCCGACAGCGacgaGUGCGgCGCCgagaaUCGUg -3' miRNA: 3'- -UGGCUGUCGCg---CGCGUgGCGGa----AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 22644 | 0.76 | 0.096976 |
Target: 5'- cGCCGGCGGCGCuggaaGCGCcggGCaCGCCgUCGCc -3' miRNA: 3'- -UGGCUGUCGCG-----CGCG---UG-GCGGaAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 12966 | 0.76 | 0.102445 |
Target: 5'- aGCCGACAGcCGCGCuugccGCACCaCCgagCGCg -3' miRNA: 3'- -UGGCUGUC-GCGCG-----CGUGGcGGaa-GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 5328 | 0.75 | 0.111195 |
Target: 5'- -gCGGCAGCGUGCGCG-CGCCgagcUUGCg -3' miRNA: 3'- ugGCUGUCGCGCGCGUgGCGGa---AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8535 | 0.75 | 0.120642 |
Target: 5'- cGCCGGCGGCgGCacgagcuucgGCGCACCGCUcacaCGCa -3' miRNA: 3'- -UGGCUGUCG-CG----------CGCGUGGCGGaa--GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 9524 | 0.75 | 0.120642 |
Target: 5'- cGCCGcguCgAGCGCGCGCACCGugaCCUgcaCGCu -3' miRNA: 3'- -UGGCu--G-UCGCGCGCGUGGC---GGAa--GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 11984 | 0.75 | 0.120642 |
Target: 5'- cGCgCGGCAGCcgcgGCGCGCGCCGCg-UCGg -3' miRNA: 3'- -UG-GCUGUCG----CGCGCGUGGCGgaAGCg -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 22490 | 0.74 | 0.138058 |
Target: 5'- gUCGACGGCG-GC-CACCGCCgaCGCg -3' miRNA: 3'- uGGCUGUCGCgCGcGUGGCGGaaGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 26956 | 0.74 | 0.141808 |
Target: 5'- uCCGACgucAGCGCGCGaaCACCGCCgaCGg -3' miRNA: 3'- uGGCUG---UCGCGCGC--GUGGCGGaaGCg -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 44857 | 0.73 | 0.14565 |
Target: 5'- cGCCGGCGGCGaucCGCGCAagguucgcUCGCUUugUCGCa -3' miRNA: 3'- -UGGCUGUCGC---GCGCGU--------GGCGGA--AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8632 | 0.73 | 0.153622 |
Target: 5'- aACCGGuCAGCGgGUucaGCACCGCUgcaCGCa -3' miRNA: 3'- -UGGCU-GUCGCgCG---CGUGGCGGaa-GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8700 | 0.73 | 0.157755 |
Target: 5'- gACCGuCGGCuCGCGCACUGCgaucuUUUCGCc -3' miRNA: 3'- -UGGCuGUCGcGCGCGUGGCG-----GAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 43694 | 0.72 | 0.170761 |
Target: 5'- gGCUaGCAGCGCGCGCGCCagaucgaacacGCCgaccaGCg -3' miRNA: 3'- -UGGcUGUCGCGCGCGUGG-----------CGGaag--CG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 10610 | 0.72 | 0.179956 |
Target: 5'- uGCCGGCAacguuCGCGCGUGCCGUCgcgacaugCGCu -3' miRNA: 3'- -UGGCUGUc----GCGCGCGUGGCGGaa------GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 52318 | 0.71 | 0.204358 |
Target: 5'- cCCGGCAGCGCGUcgguacuaccgacGUGCUGUCUaagaUCGCc -3' miRNA: 3'- uGGCUGUCGCGCG-------------CGUGGCGGA----AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 3938 | 0.71 | 0.210216 |
Target: 5'- -gCGGCAGCcaucUGCGCGCCGCUgucgaaUUCGCc -3' miRNA: 3'- ugGCUGUCGc---GCGCGUGGCGG------AAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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