Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12127 | 3' | -60.5 | NC_003309.1 | + | 1211 | 0.69 | 0.270321 |
Target: 5'- cACaCGACGGCGaCGCGCcguCGCCUgggUUGCc -3' miRNA: 3'- -UG-GCUGUCGC-GCGCGug-GCGGA---AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 1258 | 0.68 | 0.343514 |
Target: 5'- uUCGuACAGCGCG-GCGCUGUCgugcUCGUg -3' miRNA: 3'- uGGC-UGUCGCGCgCGUGGCGGa---AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 2470 | 0.67 | 0.39384 |
Target: 5'- -aCGACucGCGCaGCGCgaGCCGCCgcgagaucCGCa -3' miRNA: 3'- ugGCUGu-CGCG-CGCG--UGGCGGaa------GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 3109 | 0.66 | 0.433655 |
Target: 5'- cCCGACAGUGC-CGUGCCguucaugaacgacuuGCCggCGUa -3' miRNA: 3'- uGGCUGUCGCGcGCGUGG---------------CGGaaGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 3938 | 0.71 | 0.210216 |
Target: 5'- -gCGGCAGCcaucUGCGCGCCGCUgucgaaUUCGCc -3' miRNA: 3'- ugGCUGUCGc---GCGCGUGGCGG------AAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 4910 | 0.8 | 0.04437 |
Target: 5'- gACCGACAGCGC-CGUACCGCCcaccUCGa -3' miRNA: 3'- -UGGCUGUCGCGcGCGUGGCGGa---AGCg -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 5155 | 0.71 | 0.210216 |
Target: 5'- aGCUGcGCGuCGcCGCGCGCCGCCgcgagCGCa -3' miRNA: 3'- -UGGC-UGUcGC-GCGCGUGGCGGaa---GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 5328 | 0.75 | 0.111195 |
Target: 5'- -gCGGCAGCGUGCGCG-CGCCgagcUUGCg -3' miRNA: 3'- ugGCUGUCGCGCGCGUgGCGGa---AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 6357 | 0.66 | 0.420731 |
Target: 5'- cGCCG-CGGUGgGCuuGgCGCUUUCGCc -3' miRNA: 3'- -UGGCuGUCGCgCGcgUgGCGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 6758 | 0.69 | 0.290871 |
Target: 5'- gAUCGucACGGCGCGCGCAUacgGCCaaCGUg -3' miRNA: 3'- -UGGC--UGUCGCGCGCGUGg--CGGaaGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 7240 | 0.68 | 0.334805 |
Target: 5'- cACCGACAGgucgagauaccCGCGUuugcgcgccggcaGUACCGCCgugaugUCGUa -3' miRNA: 3'- -UGGCUGUC-----------GCGCG-------------CGUGGCGGa-----AGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 7362 | 0.78 | 0.067641 |
Target: 5'- cACCaGcCAGCGuCGCGCGCCuaagcGCCUUCGCc -3' miRNA: 3'- -UGG-CuGUCGC-GCGCGUGG-----CGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 7412 | 0.68 | 0.327029 |
Target: 5'- cCCGGucuucuuCGGCGCGCGCuuACgCGCCU-CGUc -3' miRNA: 3'- uGGCU-------GUCGCGCGCG--UG-GCGGAaGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 7761 | 0.68 | 0.312625 |
Target: 5'- cGCCGGCgccuucgccGGUGCGaCGCcgagauACC-CCUUCGCa -3' miRNA: 3'- -UGGCUG---------UCGCGC-GCG------UGGcGGAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8535 | 0.75 | 0.120642 |
Target: 5'- cGCCGGCGGCgGCacgagcuucgGCGCACCGCUcacaCGCa -3' miRNA: 3'- -UGGCUGUCG-CG----------CGCGUGGCGGaa--GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8632 | 0.73 | 0.153622 |
Target: 5'- aACCGGuCAGCGgGUucaGCACCGCUgcaCGCa -3' miRNA: 3'- -UGGCU-GUCGCgCG---CGUGGCGGaa-GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 8700 | 0.73 | 0.157755 |
Target: 5'- gACCGuCGGCuCGCGCACUGCgaucuUUUCGCc -3' miRNA: 3'- -UGGCuGUCGcGCGCGUGGCG-----GAAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 9470 | 0.71 | 0.215667 |
Target: 5'- cGCCG-CAucGCuGUGCGC-CCGCCgUCGCg -3' miRNA: 3'- -UGGCuGU--CG-CGCGCGuGGCGGaAGCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 9524 | 0.75 | 0.120642 |
Target: 5'- cGCCGcguCgAGCGCGCGCACCGugaCCUgcaCGCu -3' miRNA: 3'- -UGGCu--G-UCGCGCGCGUGGC---GGAa--GCG- -5' |
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12127 | 3' | -60.5 | NC_003309.1 | + | 10056 | 0.67 | 0.385126 |
Target: 5'- uGCCGcccGCcGCGCGCGuCAgCGCCU-CGa -3' miRNA: 3'- -UGGC---UGuCGCGCGC-GUgGCGGAaGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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