miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12127 3' -60.5 NC_003309.1 + 1211 0.69 0.270321
Target:  5'- cACaCGACGGCGaCGCGCcguCGCCUgggUUGCc -3'
miRNA:   3'- -UG-GCUGUCGC-GCGCGug-GCGGA---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 1258 0.68 0.343514
Target:  5'- uUCGuACAGCGCG-GCGCUGUCgugcUCGUg -3'
miRNA:   3'- uGGC-UGUCGCGCgCGUGGCGGa---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 2470 0.67 0.39384
Target:  5'- -aCGACucGCGCaGCGCgaGCCGCCgcgagaucCGCa -3'
miRNA:   3'- ugGCUGu-CGCG-CGCG--UGGCGGaa------GCG- -5'
12127 3' -60.5 NC_003309.1 + 3109 0.66 0.433655
Target:  5'- cCCGACAGUGC-CGUGCCguucaugaacgacuuGCCggCGUa -3'
miRNA:   3'- uGGCUGUCGCGcGCGUGG---------------CGGaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 3938 0.71 0.210216
Target:  5'- -gCGGCAGCcaucUGCGCGCCGCUgucgaaUUCGCc -3'
miRNA:   3'- ugGCUGUCGc---GCGCGUGGCGG------AAGCG- -5'
12127 3' -60.5 NC_003309.1 + 4910 0.8 0.04437
Target:  5'- gACCGACAGCGC-CGUACCGCCcaccUCGa -3'
miRNA:   3'- -UGGCUGUCGCGcGCGUGGCGGa---AGCg -5'
12127 3' -60.5 NC_003309.1 + 5155 0.71 0.210216
Target:  5'- aGCUGcGCGuCGcCGCGCGCCGCCgcgagCGCa -3'
miRNA:   3'- -UGGC-UGUcGC-GCGCGUGGCGGaa---GCG- -5'
12127 3' -60.5 NC_003309.1 + 5328 0.75 0.111195
Target:  5'- -gCGGCAGCGUGCGCG-CGCCgagcUUGCg -3'
miRNA:   3'- ugGCUGUCGCGCGCGUgGCGGa---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 6357 0.66 0.420731
Target:  5'- cGCCG-CGGUGgGCuuGgCGCUUUCGCc -3'
miRNA:   3'- -UGGCuGUCGCgCGcgUgGCGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 6758 0.69 0.290871
Target:  5'- gAUCGucACGGCGCGCGCAUacgGCCaaCGUg -3'
miRNA:   3'- -UGGC--UGUCGCGCGCGUGg--CGGaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 7240 0.68 0.334805
Target:  5'- cACCGACAGgucgagauaccCGCGUuugcgcgccggcaGUACCGCCgugaugUCGUa -3'
miRNA:   3'- -UGGCUGUC-----------GCGCG-------------CGUGGCGGa-----AGCG- -5'
12127 3' -60.5 NC_003309.1 + 7362 0.78 0.067641
Target:  5'- cACCaGcCAGCGuCGCGCGCCuaagcGCCUUCGCc -3'
miRNA:   3'- -UGG-CuGUCGC-GCGCGUGG-----CGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 7412 0.68 0.327029
Target:  5'- cCCGGucuucuuCGGCGCGCGCuuACgCGCCU-CGUc -3'
miRNA:   3'- uGGCU-------GUCGCGCGCG--UG-GCGGAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 7761 0.68 0.312625
Target:  5'- cGCCGGCgccuucgccGGUGCGaCGCcgagauACC-CCUUCGCa -3'
miRNA:   3'- -UGGCUG---------UCGCGC-GCG------UGGcGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 8535 0.75 0.120642
Target:  5'- cGCCGGCGGCgGCacgagcuucgGCGCACCGCUcacaCGCa -3'
miRNA:   3'- -UGGCUGUCG-CG----------CGCGUGGCGGaa--GCG- -5'
12127 3' -60.5 NC_003309.1 + 8632 0.73 0.153622
Target:  5'- aACCGGuCAGCGgGUucaGCACCGCUgcaCGCa -3'
miRNA:   3'- -UGGCU-GUCGCgCG---CGUGGCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 8700 0.73 0.157755
Target:  5'- gACCGuCGGCuCGCGCACUGCgaucuUUUCGCc -3'
miRNA:   3'- -UGGCuGUCGcGCGCGUGGCG-----GAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 9470 0.71 0.215667
Target:  5'- cGCCG-CAucGCuGUGCGC-CCGCCgUCGCg -3'
miRNA:   3'- -UGGCuGU--CG-CGCGCGuGGCGGaAGCG- -5'
12127 3' -60.5 NC_003309.1 + 9524 0.75 0.120642
Target:  5'- cGCCGcguCgAGCGCGCGCACCGugaCCUgcaCGCu -3'
miRNA:   3'- -UGGCu--G-UCGCGCGCGUGGC---GGAa--GCG- -5'
12127 3' -60.5 NC_003309.1 + 10056 0.67 0.385126
Target:  5'- uGCCGcccGCcGCGCGCGuCAgCGCCU-CGa -3'
miRNA:   3'- -UGGC---UGuCGCGCGC-GUgGCGGAaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.