miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12129 3' -56.2 NC_003309.1 + 10085 0.66 0.694855
Target:  5'- cGUCuGCAUUUucucgaacaGCGUAUcCGugCCGCCc -3'
miRNA:   3'- -CGGuCGUGGA---------CGCAUAuGCugGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 36770 0.66 0.684086
Target:  5'- cGCuCGGCGgUgGCG-GUugGGuCCCGCCa -3'
miRNA:   3'- -CG-GUCGUgGaCGCaUAugCU-GGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 27166 0.66 0.673268
Target:  5'- aCCGGCgcGCCgGCGUugacCGugCCGCg -3'
miRNA:   3'- cGGUCG--UGGaCGCAuau-GCugGGCGg -5'
12129 3' -56.2 NC_003309.1 + 29971 0.66 0.662411
Target:  5'- cGCCGGCAagCUGCaUAUGCaACgCGUCa -3'
miRNA:   3'- -CGGUCGUg-GACGcAUAUGcUGgGCGG- -5'
12129 3' -56.2 NC_003309.1 + 18801 0.66 0.651527
Target:  5'- aCCcGCGCCUGCGcgaugcccgACGGCaagauCGCCg -3'
miRNA:   3'- cGGuCGUGGACGCaua------UGCUGg----GCGG- -5'
12129 3' -56.2 NC_003309.1 + 10301 0.66 0.641716
Target:  5'- uGUCGcCGCCUGCGUcgccgcgacugcggAUugcccaaaguacacgGCGAUCCGCCc -3'
miRNA:   3'- -CGGUcGUGGACGCA--------------UA---------------UGCUGGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 16036 0.66 0.640626
Target:  5'- cGCCAGCAUCUuccgcggcgGCGUAgucaucggaUGCGAgcgcgaauuggUCCGUCg -3'
miRNA:   3'- -CGGUCGUGGA---------CGCAU---------AUGCU-----------GGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 19807 0.66 0.640626
Target:  5'- cGCCGGCAUUgaGCGUcu-CGucGCCCGCg -3'
miRNA:   3'- -CGGUCGUGGa-CGCAuauGC--UGGGCGg -5'
12129 3' -56.2 NC_003309.1 + 20281 0.66 0.640626
Target:  5'- aGCCcGCACCgaucaGCGccugACGcaagaacaccuGCCCGCCc -3'
miRNA:   3'- -CGGuCGUGGa----CGCaua-UGC-----------UGGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 52278 0.66 0.639535
Target:  5'- cGCCAgcGCACUUGCcgugcccGUcgACGACuugaucgaguugCCGCCu -3'
miRNA:   3'- -CGGU--CGUGGACG-------CAuaUGCUG------------GGCGG- -5'
12129 3' -56.2 NC_003309.1 + 14529 0.67 0.629716
Target:  5'- uCCuGCGCCUGCGUGaACGucuucuucguCCCGaCg -3'
miRNA:   3'- cGGuCGUGGACGCAUaUGCu---------GGGCgG- -5'
12129 3' -56.2 NC_003309.1 + 48472 0.67 0.629716
Target:  5'- cGUCAGC-CC-GCG---GCGGCCgGCCu -3'
miRNA:   3'- -CGGUCGuGGaCGCauaUGCUGGgCGG- -5'
12129 3' -56.2 NC_003309.1 + 3579 0.67 0.626444
Target:  5'- aGCCAGCcccacuggcgcccgACCgcguaggcgGCGUAUcgcgACGACUgauCGCCg -3'
miRNA:   3'- -CGGUCG--------------UGGa--------CGCAUA----UGCUGG---GCGG- -5'
12129 3' -56.2 NC_003309.1 + 51062 0.67 0.618809
Target:  5'- ---cGCACUgGCGUcaACG-CCCGCCa -3'
miRNA:   3'- cgguCGUGGaCGCAuaUGCuGGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 20766 0.67 0.586193
Target:  5'- cCCGGCACCgGCGUu--CGAUugCUGCUa -3'
miRNA:   3'- cGGUCGUGGaCGCAuauGCUG--GGCGG- -5'
12129 3' -56.2 NC_003309.1 + 28605 0.67 0.575385
Target:  5'- cGCCAGaucCCUGCaacacaAUACGG-CCGCCa -3'
miRNA:   3'- -CGGUCgu-GGACGca----UAUGCUgGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 45758 0.68 0.564623
Target:  5'- uUCGGCGCCUGa-UGUACGcGCCgGUCg -3'
miRNA:   3'- cGGUCGUGGACgcAUAUGC-UGGgCGG- -5'
12129 3' -56.2 NC_003309.1 + 6556 0.68 0.564623
Target:  5'- uCCAcguagcGCGCCuUGCGUAUcGCGGCgCCaGCCu -3'
miRNA:   3'- cGGU------CGUGG-ACGCAUA-UGCUG-GG-CGG- -5'
12129 3' -56.2 NC_003309.1 + 46362 0.68 0.553914
Target:  5'- cGCgAGCGCCgccucgaucUGCuuacgcggacGUAcGCGugCCGCCg -3'
miRNA:   3'- -CGgUCGUGG---------ACG----------CAUaUGCugGGCGG- -5'
12129 3' -56.2 NC_003309.1 + 12630 0.68 0.543266
Target:  5'- aGCC-GCGCUcGCGc--GCGACCUGCUc -3'
miRNA:   3'- -CGGuCGUGGaCGCauaUGCUGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.