Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12130 | 5' | -54.9 | NC_003309.1 | + | 17899 | 1.13 | 0.000723 |
Target: 5'- gCGUCGAACGUCAUGCCGACGAGCGCCg -3' miRNA: 3'- -GCAGCUUGCAGUACGGCUGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 18435 | 0.82 | 0.101623 |
Target: 5'- uCGUCGGAuCGUUGUaGCUGACGAGCGCg -3' miRNA: 3'- -GCAGCUU-GCAGUA-CGGCUGCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 22382 | 0.76 | 0.233311 |
Target: 5'- gCGUCGAACGcccgcgcggccugcUCGUcggcaaGCCGAUGuGCGCCg -3' miRNA: 3'- -GCAGCUUGC--------------AGUA------CGGCUGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 17512 | 0.76 | 0.235124 |
Target: 5'- gCGUCGGACGUCAgcgGCaCGcCGA-CGCCg -3' miRNA: 3'- -GCAGCUUGCAGUa--CG-GCuGCUcGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 45263 | 0.76 | 0.253909 |
Target: 5'- gGUCGAAUG-CcgGCCGccGCGuGCGCCu -3' miRNA: 3'- gCAGCUUGCaGuaCGGC--UGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 39016 | 0.75 | 0.267107 |
Target: 5'- -aUCGAGC-UCAUGCCGuCcGGCGCCa -3' miRNA: 3'- gcAGCUUGcAGUACGGCuGcUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10973 | 0.73 | 0.357982 |
Target: 5'- --cCGAGCGcaucaUCGUGCCcguacgcGCGAGCGCCg -3' miRNA: 3'- gcaGCUUGC-----AGUACGGc------UGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 5412 | 0.72 | 0.438174 |
Target: 5'- uCGUCGGGauaucggUGUCAgcaccgauguaGCCGACGAucGCGCCa -3' miRNA: 3'- -GCAGCUU-------GCAGUa----------CGGCUGCU--CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 22737 | 0.71 | 0.45855 |
Target: 5'- uGUCGAucucGCGcugaUCGUcGCCGGCGA-CGCCg -3' miRNA: 3'- gCAGCU----UGC----AGUA-CGGCUGCUcGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 8973 | 0.71 | 0.45855 |
Target: 5'- -aUCGAGCu---UGCCGAacuCGAGCGCCu -3' miRNA: 3'- gcAGCUUGcaguACGGCU---GCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 9715 | 0.71 | 0.468429 |
Target: 5'- gCGUCGAGCGgu-UGCCGugugucgcgcGCGAuGCGCa -3' miRNA: 3'- -GCAGCUUGCaguACGGC----------UGCU-CGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 7814 | 0.71 | 0.478417 |
Target: 5'- cCGgCGAGCGcCAUGUCGA-GcGCGCCa -3' miRNA: 3'- -GCaGCUUGCaGUACGGCUgCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 18731 | 0.71 | 0.498697 |
Target: 5'- uGUCGAGCGUgAUcgucucGCCGGCugcGGCGCg -3' miRNA: 3'- gCAGCUUGCAgUA------CGGCUGc--UCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 25555 | 0.7 | 0.518311 |
Target: 5'- gGUCGggUGUagcggGCCGAagacgcaCGGGCGUCg -3' miRNA: 3'- gCAGCuuGCAgua--CGGCU-------GCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 16773 | 0.7 | 0.529806 |
Target: 5'- aCGgCGAACGUgAggccGCCGuCGcGCGCCg -3' miRNA: 3'- -GCaGCUUGCAgUa---CGGCuGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 46757 | 0.7 | 0.550935 |
Target: 5'- --aCGGGCGUCAcuucGCCaGCGcGCGCCg -3' miRNA: 3'- gcaGCUUGCAGUa---CGGcUGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 3250 | 0.69 | 0.561597 |
Target: 5'- --cUGAACGUCAUGCCcuccugcAgGAGCGCa -3' miRNA: 3'- gcaGCUUGCAGUACGGc------UgCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 15245 | 0.69 | 0.576616 |
Target: 5'- aCGaUCG-ACGUCGacugaagaUGCCGAUGAaagcgcagcacgucgGCGCCg -3' miRNA: 3'- -GC-AGCuUGCAGU--------ACGGCUGCU---------------CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 31994 | 0.69 | 0.593886 |
Target: 5'- gCGUCGcACGUCA-GCCGcaaACuGGCGCa -3' miRNA: 3'- -GCAGCuUGCAGUaCGGC---UGcUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 999 | 0.69 | 0.593886 |
Target: 5'- uCGUCGAggACGaaCAUGCCGAUGccgaCGCCc -3' miRNA: 3'- -GCAGCU--UGCa-GUACGGCUGCuc--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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