Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12130 | 5' | -54.9 | NC_003309.1 | + | 554 | 0.66 | 0.772588 |
Target: 5'- uGUCGggUGUUuucggcuuugcGCCGACcaGGCGCUg -3' miRNA: 3'- gCAGCuuGCAGua---------CGGCUGc-UCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 999 | 0.69 | 0.593886 |
Target: 5'- uCGUCGAggACGaaCAUGCCGAUGccgaCGCCc -3' miRNA: 3'- -GCAGCU--UGCa-GUACGGCUGCuc--GCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 1299 | 0.67 | 0.702162 |
Target: 5'- --aUGAGCGgc-UGUCGACGcGCGCCc -3' miRNA: 3'- gcaGCUUGCaguACGGCUGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 1748 | 0.68 | 0.64821 |
Target: 5'- cCGUCG-AUGUCGUGCCaGAaaAGCcggGCCa -3' miRNA: 3'- -GCAGCuUGCAGUACGG-CUgcUCG---CGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 3250 | 0.69 | 0.561597 |
Target: 5'- --cUGAACGUCAUGCCcuccugcAgGAGCGCa -3' miRNA: 3'- gcaGCUUGCAGUACGGc------UgCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 5149 | 0.66 | 0.764576 |
Target: 5'- gCGUCGccGCG-CGccGCCG-CGAGCGCa -3' miRNA: 3'- -GCAGCu-UGCaGUa-CGGCuGCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 5412 | 0.72 | 0.438174 |
Target: 5'- uCGUCGGGauaucggUGUCAgcaccgauguaGCCGACGAucGCGCCa -3' miRNA: 3'- -GCAGCUU-------GCAGUa----------CGGCUGCU--CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 5666 | 0.68 | 0.669906 |
Target: 5'- gCGUCGaAGCGUCGcuUGCggugaUGACGuugcugggaAGCGCCc -3' miRNA: 3'- -GCAGC-UUGCAGU--ACG-----GCUGC---------UCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 7814 | 0.71 | 0.478417 |
Target: 5'- cCGgCGAGCGcCAUGUCGA-GcGCGCCa -3' miRNA: 3'- -GCaGCUUGCaGUACGGCUgCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 8973 | 0.71 | 0.45855 |
Target: 5'- -aUCGAGCu---UGCCGAacuCGAGCGCCu -3' miRNA: 3'- gcAGCUUGcaguACGGCU---GCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 9715 | 0.71 | 0.468429 |
Target: 5'- gCGUCGAGCGgu-UGCCGugugucgcgcGCGAuGCGCa -3' miRNA: 3'- -GCAGCUUGCaguACGGC----------UGCU-CGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10346 | 0.66 | 0.774577 |
Target: 5'- -cUUGAuCGUCuccUCGACGAGCGCUc -3' miRNA: 3'- gcAGCUuGCAGuacGGCUGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10395 | 0.67 | 0.733818 |
Target: 5'- -cUCGAuCGcCcUGCgcuuUGGCGAGCGCCg -3' miRNA: 3'- gcAGCUuGCaGuACG----GCUGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10473 | 0.67 | 0.702162 |
Target: 5'- -aUCGcGCG-CAUGCCG-CGAGUucgGCCu -3' miRNA: 3'- gcAGCuUGCaGUACGGCuGCUCG---CGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10652 | 0.66 | 0.784435 |
Target: 5'- cCG-CGuACGgCAUGCCcGCGAugcgcGCGCCg -3' miRNA: 3'- -GCaGCuUGCaGUACGGcUGCU-----CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10742 | 0.69 | 0.604723 |
Target: 5'- gCGcCGucCGUCGcUGCUGcGCGAGCGCg -3' miRNA: 3'- -GCaGCuuGCAGU-ACGGC-UGCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 10973 | 0.73 | 0.357982 |
Target: 5'- --cCGAGCGcaucaUCGUGCCcguacgcGCGAGCGCCg -3' miRNA: 3'- gcaGCUUGC-----AGUACGGc------UGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 12566 | 0.66 | 0.784435 |
Target: 5'- -cUCGGGCGagccaagCGUGCCGuccuuuCGcGCGCCc -3' miRNA: 3'- gcAGCUUGCa------GUACGGCu-----GCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 15245 | 0.69 | 0.576616 |
Target: 5'- aCGaUCG-ACGUCGacugaagaUGCCGAUGAaagcgcagcacgucgGCGCCg -3' miRNA: 3'- -GC-AGCuUGCAGU--------ACGGCUGCU---------------CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 15420 | 0.67 | 0.723351 |
Target: 5'- uGUCcGGCGccggaacaccuUCGcGCCGACGAGauCGCCa -3' miRNA: 3'- gCAGcUUGC-----------AGUaCGGCUGCUC--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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