miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12130 5' -54.9 NC_003309.1 + 48235 0.68 0.64821
Target:  5'- -cUCGcuCGaUCGaGCCGucCGAGCGCCg -3'
miRNA:   3'- gcAGCuuGC-AGUaCGGCu-GCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 46757 0.7 0.550935
Target:  5'- --aCGGGCGUCAcuucGCCaGCGcGCGCCg -3'
miRNA:   3'- gcaGCUUGCAGUa---CGGcUGCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 46338 0.67 0.702162
Target:  5'- aCG-CGGACGUacgCGUGCCGcCGuacCGCCg -3'
miRNA:   3'- -GCaGCUUGCA---GUACGGCuGCuc-GCGG- -5'
12130 5' -54.9 NC_003309.1 + 45736 0.66 0.764576
Target:  5'- gGUCGuacAGCGg-GUGCUucggguccguGACGAGCGUCa -3'
miRNA:   3'- gCAGC---UUGCagUACGG----------CUGCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 45263 0.76 0.253909
Target:  5'- gGUCGAAUG-CcgGCCGccGCGuGCGCCu -3'
miRNA:   3'- gCAGCUUGCaGuaCGGC--UGCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 44455 0.68 0.65907
Target:  5'- -aUCGAacacgACGUCGcccggccgacUGCCGGCGAGCacGCa -3'
miRNA:   3'- gcAGCU-----UGCAGU----------ACGGCUGCUCG--CGg -5'
12130 5' -54.9 NC_003309.1 + 44317 0.67 0.717027
Target:  5'- aCGUCGGugACGgcugccgagaacgauUCGuuuugcuucUGCCGcuuugcACGAGCGCCg -3'
miRNA:   3'- -GCAGCU--UGC---------------AGU---------ACGGC------UGCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 43349 0.66 0.77557
Target:  5'- -uUCGAGCGUCuugacgaucucucgGCCGACuAG-GCCg -3'
miRNA:   3'- gcAGCUUGCAGua------------CGGCUGcUCgCGG- -5'
12130 5' -54.9 NC_003309.1 + 42660 0.67 0.712795
Target:  5'- aG-CGAACGg---GCCGGCGAugGCGUCc -3'
miRNA:   3'- gCaGCUUGCaguaCGGCUGCU--CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 39016 0.75 0.267107
Target:  5'- -aUCGAGC-UCAUGCCGuCcGGCGCCa -3'
miRNA:   3'- gcAGCUUGcAGUACGGCuGcUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 34524 0.66 0.743153
Target:  5'- cCGUCG-AUGUgGgcgGCCGuCGAaucgauuGCGCCg -3'
miRNA:   3'- -GCAGCuUGCAgUa--CGGCuGCU-------CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 31994 0.69 0.593886
Target:  5'- gCGUCGcACGUCA-GCCGcaaACuGGCGCa -3'
miRNA:   3'- -GCAGCuUGCAGUaCGGC---UGcUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 31750 0.68 0.64821
Target:  5'- -cUCGGcaGCaUCAUGCgCGAUGAGCGUg -3'
miRNA:   3'- gcAGCU--UGcAGUACG-GCUGCUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 30157 0.67 0.723351
Target:  5'- aCG-CGAACGUCcgGaCGGCGcaggggauauGCGCCc -3'
miRNA:   3'- -GCaGCUUGCAGuaCgGCUGCu---------CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 25555 0.7 0.518311
Target:  5'- gGUCGggUGUagcggGCCGAagacgcaCGGGCGUCg -3'
miRNA:   3'- gCAGCuuGCAgua--CGGCU-------GCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 23593 0.68 0.669906
Target:  5'- ---gGAugGUCGUugagGCUGACGAucgcGCGCCc -3'
miRNA:   3'- gcagCUugCAGUA----CGGCUGCU----CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 22737 0.71 0.45855
Target:  5'- uGUCGAucucGCGcugaUCGUcGCCGGCGA-CGCCg -3'
miRNA:   3'- gCAGCU----UGC----AGUA-CGGCUGCUcGCGG- -5'
12130 5' -54.9 NC_003309.1 + 22491 0.66 0.784435
Target:  5'- gGUCGAcgGCGgccaccGCCGACGcGGCGgCa -3'
miRNA:   3'- gCAGCU--UGCagua--CGGCUGC-UCGCgG- -5'
12130 5' -54.9 NC_003309.1 + 22382 0.76 0.233311
Target:  5'- gCGUCGAACGcccgcgcggccugcUCGUcggcaaGCCGAUGuGCGCCg -3'
miRNA:   3'- -GCAGCUUGC--------------AGUA------CGGCUGCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 18731 0.71 0.498697
Target:  5'- uGUCGAGCGUgAUcgucucGCCGGCugcGGCGCg -3'
miRNA:   3'- gCAGCUUGCAgUA------CGGCUGc--UCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.