Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12130 | 5' | -54.9 | NC_003309.1 | + | 16411 | 0.68 | 0.637336 |
Target: 5'- aCGUC--ACGUCGcgGCCGACGucgagaaaaccGGCGUCc -3' miRNA: 3'- -GCAGcuUGCAGUa-CGGCUGC-----------UCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 16773 | 0.7 | 0.529806 |
Target: 5'- aCGgCGAACGUgAggccGCCGuCGcGCGCCg -3' miRNA: 3'- -GCaGCUUGCAgUa---CGGCuGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 16935 | 0.66 | 0.754441 |
Target: 5'- --cCGAACGUCGcgaucgcGCCGACaGcgacgagugcGGCGCCg -3' miRNA: 3'- gcaGCUUGCAGUa------CGGCUG-C----------UCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 17512 | 0.76 | 0.235124 |
Target: 5'- gCGUCGGACGUCAgcgGCaCGcCGA-CGCCg -3' miRNA: 3'- -GCAGCUUGCAGUa--CG-GCuGCUcGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 17899 | 1.13 | 0.000723 |
Target: 5'- gCGUCGAACGUCAUGCCGACGAGCGCCg -3' miRNA: 3'- -GCAGCUUGCAGUACGGCUGCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 18435 | 0.82 | 0.101623 |
Target: 5'- uCGUCGGAuCGUUGUaGCUGACGAGCGCg -3' miRNA: 3'- -GCAGCUU-GCAGUA-CGGCUGCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 18731 | 0.71 | 0.498697 |
Target: 5'- uGUCGAGCGUgAUcgucucGCCGGCugcGGCGCg -3' miRNA: 3'- gCAGCUUGCAgUA------CGGCUGc--UCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 22382 | 0.76 | 0.233311 |
Target: 5'- gCGUCGAACGcccgcgcggccugcUCGUcggcaaGCCGAUGuGCGCCg -3' miRNA: 3'- -GCAGCUUGC--------------AGUA------CGGCUGCuCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 22491 | 0.66 | 0.784435 |
Target: 5'- gGUCGAcgGCGgccaccGCCGACGcGGCGgCa -3' miRNA: 3'- gCAGCU--UGCagua--CGGCUGC-UCGCgG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 22737 | 0.71 | 0.45855 |
Target: 5'- uGUCGAucucGCGcugaUCGUcGCCGGCGA-CGCCg -3' miRNA: 3'- gCAGCU----UGC----AGUA-CGGCUGCUcGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 23593 | 0.68 | 0.669906 |
Target: 5'- ---gGAugGUCGUugagGCUGACGAucgcGCGCCc -3' miRNA: 3'- gcagCUugCAGUA----CGGCUGCU----CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 25555 | 0.7 | 0.518311 |
Target: 5'- gGUCGggUGUagcggGCCGAagacgcaCGGGCGUCg -3' miRNA: 3'- gCAGCuuGCAgua--CGGCU-------GCUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 30157 | 0.67 | 0.723351 |
Target: 5'- aCG-CGAACGUCcgGaCGGCGcaggggauauGCGCCc -3' miRNA: 3'- -GCaGCUUGCAGuaCgGCUGCu---------CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 31750 | 0.68 | 0.64821 |
Target: 5'- -cUCGGcaGCaUCAUGCgCGAUGAGCGUg -3' miRNA: 3'- gcAGCU--UGcAGUACG-GCUGCUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 31994 | 0.69 | 0.593886 |
Target: 5'- gCGUCGcACGUCA-GCCGcaaACuGGCGCa -3' miRNA: 3'- -GCAGCuUGCAGUaCGGC---UGcUCGCGg -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 34524 | 0.66 | 0.743153 |
Target: 5'- cCGUCG-AUGUgGgcgGCCGuCGAaucgauuGCGCCg -3' miRNA: 3'- -GCAGCuUGCAgUa--CGGCuGCU-------CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 39016 | 0.75 | 0.267107 |
Target: 5'- -aUCGAGC-UCAUGCCGuCcGGCGCCa -3' miRNA: 3'- gcAGCUUGcAGUACGGCuGcUCGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 42660 | 0.67 | 0.712795 |
Target: 5'- aG-CGAACGg---GCCGGCGAugGCGUCc -3' miRNA: 3'- gCaGCUUGCaguaCGGCUGCU--CGCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 43349 | 0.66 | 0.77557 |
Target: 5'- -uUCGAGCGUCuugacgaucucucgGCCGACuAG-GCCg -3' miRNA: 3'- gcAGCUUGCAGua------------CGGCUGcUCgCGG- -5' |
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12130 | 5' | -54.9 | NC_003309.1 | + | 44317 | 0.67 | 0.717027 |
Target: 5'- aCGUCGGugACGgcugccgagaacgauUCGuuuugcuucUGCCGcuuugcACGAGCGCCg -3' miRNA: 3'- -GCAGCU--UGC---------------AGU---------ACGGC------UGCUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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