miRNA: 3'- gccUAUGCCGGCGGCUaGGCcGCCGG- -5'
miRNA: 3'- gCCU--AUGcCGGCGGCUagGCCGCCGg -5'
miRNA: 3'- -GCCUaUGCCGGCGGcUA----GGCCGC---CGG- -5'
miRNA: 3'- -GCCUaUGCCGgCGGCUAg------GCCGCCGG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12132 | 3' | -61.9 | NC_003309.1 | + | 8712 | 0.7 | 0.236261 |
|
Target: 5'- --cAUGCGGUCGCCGA-CCGuCGGCUc -3' miRNA: 3'- gccUAUGCCGGCGGCUaGGCcGCCGG- -5' |
|||||||
| 12132 | 3' | -61.9 | NC_003309.1 | + | 8546 | 0.7 | 0.236261 |
|
Target: 5'- gGGAguUAC-GCCGCCGG--CGGCGGCa -3' miRNA: 3'- gCCU--AUGcCGGCGGCUagGCCGCCGg -5' |
|||||||
| 12132 | 3' | -61.9 | NC_003309.1 | + | 7835 | 0.74 | 0.127725 |
|
Target: 5'- cCGGA-ACGGCCGCCaGUcagcCCGGCGagcGCCa -3' miRNA: 3'- -GCCUaUGCCGGCGGcUA----GGCCGC---CGG- -5' |
|||||||
| 12132 | 3' | -61.9 | NC_003309.1 | + | 5065 | 0.77 | 0.070693 |
|
Target: 5'- aCGGGcGCGGCgGCCGGUgccgcgaCGGCGGUCg -3' miRNA: 3'- -GCCUaUGCCGgCGGCUAg------GCCGCCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home