Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 28197 | 0.66 | 0.570937 |
Target: 5'- --cGUCAGgGGCGCGAUaguuggugcacaCGACGGCa- -3' miRNA: 3'- cgcCAGUCgCUGUGCUG------------GCUGCCGcc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 13114 | 0.67 | 0.560546 |
Target: 5'- -aGGUguGCGcGCACGcCCGGCuGCGa -3' miRNA: 3'- cgCCAguCGC-UGUGCuGGCUGcCGCc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 31476 | 0.67 | 0.53993 |
Target: 5'- cCGG-CGGCGAaaGCGGCC-ACGGCGc -3' miRNA: 3'- cGCCaGUCGCUg-UGCUGGcUGCCGCc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 25761 | 0.67 | 0.519576 |
Target: 5'- cGCGG--AGCG-CAUGAUCGGCGaCGGa -3' miRNA: 3'- -CGCCagUCGCuGUGCUGGCUGCcGCC- -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 31537 | 0.67 | 0.519576 |
Target: 5'- gGCGGcaAGCGccagcucgaacuACGCcggccaGCCGACGGCGGc -3' miRNA: 3'- -CGCCagUCGC------------UGUGc-----UGGCUGCCGCC- -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 20042 | 0.68 | 0.479836 |
Target: 5'- -aGGUCGGCG-UACGACuucgCGACGGUu- -3' miRNA: 3'- cgCCAGUCGCuGUGCUG----GCUGCCGcc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 21643 | 0.68 | 0.470132 |
Target: 5'- uCGGUCAacguaagcGaCGACGCGACCGACGcuaugcuucccGCGu -3' miRNA: 3'- cGCCAGU--------C-GCUGUGCUGGCUGC-----------CGCc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 14577 | 0.68 | 0.451031 |
Target: 5'- -aGGUaCAGCGACGCuugcguauGAagcccuguugcaCCGACGGCGa -3' miRNA: 3'- cgCCA-GUCGCUGUG--------CU------------GGCUGCCGCc -5' |
|||||||
12134 | 3' | -58.5 | NC_003309.1 | + | 19384 | 1.11 | 0.000447 |
Target: 5'- cGCGGUCAGCGACACGACCGACGGCGGc -3' miRNA: 3'- -CGCCAGUCGCUGUGCUGGCUGCCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home