miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12137 5' -52.7 NC_003309.1 + 11982 0.66 0.874975
Target:  5'- --cGCGgcAGCcGCGGCGCGcGCCG-Cg -3'
miRNA:   3'- aguUGCauUCGcUGCUGCGC-UGGCuG- -5'
12137 5' -52.7 NC_003309.1 + 26344 0.66 0.874975
Target:  5'- gCGACGc--GCGcACGACGaCGGCCG-Cu -3'
miRNA:   3'- aGUUGCauuCGC-UGCUGC-GCUGGCuG- -5'
12137 5' -52.7 NC_003309.1 + 34437 0.66 0.874975
Target:  5'- gUCGAcCGUGGagagcGCGAUGGCGUaguacGGCCGAg -3'
miRNA:   3'- -AGUU-GCAUU-----CGCUGCUGCG-----CUGGCUg -5'
12137 5' -52.7 NC_003309.1 + 35084 0.66 0.866996
Target:  5'- gUCGGCGaUGuuguguucuacGGCGACGuCGC-ACCGAUc -3'
miRNA:   3'- -AGUUGC-AU-----------UCGCUGCuGCGcUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 30027 0.66 0.858766
Target:  5'- gUCAACGUc-GCG--GACGUGaaGCCGACg -3'
miRNA:   3'- -AGUUGCAuuCGCugCUGCGC--UGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 52479 0.66 0.850296
Target:  5'- cCAAgGcAAGCGACGACgGCcGCCG-Ca -3'
miRNA:   3'- aGUUgCaUUCGCUGCUG-CGcUGGCuG- -5'
12137 5' -52.7 NC_003309.1 + 18433 0.66 0.850296
Target:  5'- gUCGgauCGUuguAGCuGACGAgCGCGACCGu- -3'
miRNA:   3'- -AGUu--GCAu--UCG-CUGCU-GCGCUGGCug -5'
12137 5' -52.7 NC_003309.1 + 37590 0.66 0.841592
Target:  5'- gCAACGcuacGGCGACGAcCGCGGCg--- -3'
miRNA:   3'- aGUUGCau--UCGCUGCU-GCGCUGgcug -5'
12137 5' -52.7 NC_003309.1 + 15334 0.66 0.832664
Target:  5'- gCAGCGUcGGCGAUGgcugcuGCGCGuCgGAUg -3'
miRNA:   3'- aGUUGCAuUCGCUGC------UGCGCuGgCUG- -5'
12137 5' -52.7 NC_003309.1 + 44320 0.66 0.832664
Target:  5'- aCAACGUcGGUGACGGCu--GCCGAg -3'
miRNA:   3'- aGUUGCAuUCGCUGCUGcgcUGGCUg -5'
12137 5' -52.7 NC_003309.1 + 17507 0.66 0.832664
Target:  5'- -gGACGUcAGCGGC-ACGCcgacGCCGGCc -3'
miRNA:   3'- agUUGCAuUCGCUGcUGCGc---UGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 2279 0.66 0.832664
Target:  5'- aUCGACuc-GGaauCGACGCGAUCGGCg -3'
miRNA:   3'- -AGUUGcauUCgcuGCUGCGCUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 41457 0.67 0.814173
Target:  5'- cUAACcUGcGCGAUGGCGCaagggacucccaGACCGGCa -3'
miRNA:   3'- aGUUGcAUuCGCUGCUGCG------------CUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 3420 0.67 0.814173
Target:  5'- aCAGCGUGuAGaUGACGAacuggaGCGACUGGu -3'
miRNA:   3'- aGUUGCAU-UC-GCUGCUg-----CGCUGGCUg -5'
12137 5' -52.7 NC_003309.1 + 31729 0.67 0.80463
Target:  5'- -gAGCGUGAGUGGC--CGUGGCCG-Ca -3'
miRNA:   3'- agUUGCAUUCGCUGcuGCGCUGGCuG- -5'
12137 5' -52.7 NC_003309.1 + 16414 0.67 0.80463
Target:  5'- gCAACGUc----ACGuCGCGGCCGACg -3'
miRNA:   3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 18311 0.67 0.80463
Target:  5'- aUCGGCcgacGCGACGACGgaGCCGGCc -3'
miRNA:   3'- -AGUUGcauuCGCUGCUGCgcUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 46101 0.67 0.788982
Target:  5'- cUCGACaccgAAcGCGACGGCgauagcauccucgguGUGGCCGACg -3'
miRNA:   3'- -AGUUGca--UU-CGCUGCUG---------------CGCUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 22462 0.67 0.785001
Target:  5'- nCAuCGUGcGCGGCGAucgcaCGCuGCCGGCg -3'
miRNA:   3'- aGUuGCAUuCGCUGCU-----GCGcUGGCUG- -5'
12137 5' -52.7 NC_003309.1 + 16768 0.68 0.774939
Target:  5'- -gAACGUGAGgcCGcCGuCGCGcGCCGACg -3'
miRNA:   3'- agUUGCAUUC--GCuGCuGCGC-UGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.