Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12138 | 5' | -53.1 | NC_003309.1 | + | 3256 | 0.67 | 0.742058 |
Target: 5'- aGCGGCcugaaCGUCAUGCccuccugcaGGAGCGCa -3' miRNA: 3'- gCGCCGuaa--GUAGUGCGca-------CUUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 3550 | 0.66 | 0.81286 |
Target: 5'- gGCGGCGU--AUCGCGaCGacUGAucgccGCGCa -3' miRNA: 3'- gCGCCGUAagUAGUGC-GC--ACUu----CGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 4988 | 0.68 | 0.709762 |
Target: 5'- aGCGGC-UUC--CGCGCGUucGAucuGCGCg -3' miRNA: 3'- gCGCCGuAAGuaGUGCGCA--CUu--CGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 8829 | 0.66 | 0.803242 |
Target: 5'- cCGC-GCAUUCG-CuuGCGUGu-GCGCg -3' miRNA: 3'- -GCGcCGUAAGUaGugCGCACuuCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 9709 | 0.7 | 0.56553 |
Target: 5'- aGCGGUugccgugUGUCGCGCGcGAuGCGCa -3' miRNA: 3'- gCGCCGuaa----GUAGUGCGCaCUuCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 10610 | 0.66 | 0.81286 |
Target: 5'- uGcCGGCAacguUCGCGCGUGccGuCGCg -3' miRNA: 3'- gC-GCCGUaaguAGUGCGCACuuC-GCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 11547 | 0.77 | 0.24379 |
Target: 5'- uGCGGCcacGUUCAUCGC-CGUGAGugcuuGCGCg -3' miRNA: 3'- gCGCCG---UAAGUAGUGcGCACUU-----CGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 11983 | 0.67 | 0.773325 |
Target: 5'- gCGCGGCAgccgCggCGCGCGccgcgucggcguUGAAGC-Cg -3' miRNA: 3'- -GCGCCGUaa--GuaGUGCGC------------ACUUCGcG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 12058 | 0.79 | 0.181348 |
Target: 5'- cCGCGGCGUUgGUggaUACGCGUGAcgucuGCGCc -3' miRNA: 3'- -GCGCCGUAAgUA---GUGCGCACUu----CGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 16020 | 0.71 | 0.554563 |
Target: 5'- gGCGGCGUagUCAUCGgaUGCG---AGCGCg -3' miRNA: 3'- gCGCCGUA--AGUAGU--GCGCacuUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 17815 | 0.74 | 0.380144 |
Target: 5'- gCGuCGGCGaUCGUCGCcgugugcgcguucgGCGUGAuacGGCGCa -3' miRNA: 3'- -GC-GCCGUaAGUAGUG--------------CGCACU---UCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 18842 | 0.66 | 0.8405 |
Target: 5'- gCGCGGCAagCGUCAC-CGUGucacCGUu -3' miRNA: 3'- -GCGCCGUaaGUAGUGcGCACuuc-GCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 21960 | 1.12 | 0.001016 |
Target: 5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3' miRNA: 3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 22455 | 0.7 | 0.575449 |
Target: 5'- gCGCGGCGaUCG-CACGCugccggcGUcGAGCGCg -3' miRNA: 3'- -GCGCCGUaAGUaGUGCG-------CAcUUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 22664 | 0.71 | 0.543659 |
Target: 5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3' miRNA: 3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 27207 | 0.68 | 0.71954 |
Target: 5'- aGCGGCGcagcCAcgcugccguugauUCGCGCGUGuuguagaccGGCGCg -3' miRNA: 3'- gCGCCGUaa--GU-------------AGUGCGCACu--------UCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 31749 | 0.67 | 0.773325 |
Target: 5'- -uCGGCAg-CAUCAUGCGcGAugAGCGUg -3' miRNA: 3'- gcGCCGUaaGUAGUGCGCaCU--UCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 31999 | 0.66 | 0.831499 |
Target: 5'- cCGCGGCGUcgcaCGUCAgcCGCaaacuGGCGCa -3' miRNA: 3'- -GCGCCGUAa---GUAGU--GCGcacu-UCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 32981 | 0.72 | 0.490343 |
Target: 5'- uCGCaGCccgCAcCGCGCGcUGAGGCGCg -3' miRNA: 3'- -GCGcCGuaaGUaGUGCGC-ACUUCGCG- -5' |
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12138 | 5' | -53.1 | NC_003309.1 | + | 33838 | 0.66 | 0.803242 |
Target: 5'- aCGUGGCAUUCGUgAuCGaCGUGuu-CGCc -3' miRNA: 3'- -GCGCCGUAAGUAgU-GC-GCACuucGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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