Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12141 | 5' | -52.6 | NC_003309.1 | + | 8176 | 0.7 | 0.617948 |
Target: 5'- ---cAGAUCUGCCGCGUCGAgguccguUGAcGCCa -3' miRNA: 3'- ucguUUUGGGCGGCGCAGCU-------ACU-UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 12067 | 0.71 | 0.585651 |
Target: 5'- cGCGGGcCgCCGCgGCGUUGGUGGAUa -3' miRNA: 3'- uCGUUUuG-GGCGgCGCAGCUACUUGg -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 15847 | 0.72 | 0.541695 |
Target: 5'- --aAAAACCCGCCGUGUgGcgGGuCCu -3' miRNA: 3'- ucgUUUUGGGCGGCGCAgCuaCUuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 22006 | 0.74 | 0.399442 |
Target: 5'- cGuCAGGACCgGCucCGCGugcUCGAUGAGCCg -3' miRNA: 3'- uC-GUUUUGGgCG--GCGC---AGCUACUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 8260 | 0.76 | 0.337812 |
Target: 5'- cGCGAAugUCGUCGCGUCGAUuu-CCu -3' miRNA: 3'- uCGUUUugGGCGGCGCAGCUAcuuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 31643 | 0.76 | 0.329593 |
Target: 5'- cGCAGuGCCCGCuCGCGugcgcuuccugUCGAUgGAGCCu -3' miRNA: 3'- uCGUUuUGGGCG-GCGC-----------AGCUA-CUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 11973 | 0.76 | 0.305827 |
Target: 5'- cGCGGcGCgCGCCGCGUCGGcguUGAAgCCg -3' miRNA: 3'- uCGUUuUGgGCGGCGCAGCU---ACUU-GG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 23982 | 0.76 | 0.305827 |
Target: 5'- gAGCGGAACgCGCCGCGacgaUCGGUGccCCu -3' miRNA: 3'- -UCGUUUUGgGCGGCGC----AGCUACuuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 1768 | 0.76 | 0.298202 |
Target: 5'- cGCAgaaguAAugCCGCCGCccGUCGAUGucguGCCa -3' miRNA: 3'- uCGU-----UUugGGCGGCG--CAGCUACu---UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 11502 | 0.86 | 0.076795 |
Target: 5'- cGCGAGGCUCGCCGUGUCGAUcGcGCCg -3' miRNA: 3'- uCGUUUUGGGCGGCGCAGCUA-CuUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 24414 | 1.13 | 0.000975 |
Target: 5'- gAGCAAAACCCGCCGCGUCGAUGAACCg -3' miRNA: 3'- -UCGUUUUGGGCGGCGCAGCUACUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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