miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12141 5' -52.6 NC_003309.1 + 30379 0.68 0.771631
Target:  5'- aAGCGAAaaagGCCgGCCuCGUCGG-GAAUCc -3'
miRNA:   3'- -UCGUUU----UGGgCGGcGCAGCUaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 11828 0.68 0.765456
Target:  5'- cGCGc-GCCCGCCGCGgcuuucgaauccuugUCGgcGAucGCCu -3'
miRNA:   3'- uCGUuuUGGGCGGCGC---------------AGCuaCU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 16881 0.68 0.761312
Target:  5'- --aAGAGCCCGCCGCGcuugcugcCGAcGAuuACCg -3'
miRNA:   3'- ucgUUUUGGGCGGCGCa-------GCUaCU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 19178 0.68 0.761312
Target:  5'- cGGCGAcguAGCUCGUCGCGU-GGUucGCCg -3'
miRNA:   3'- -UCGUU---UUGGGCGGCGCAgCUAcuUGG- -5'
12141 5' -52.6 NC_003309.1 + 46579 0.68 0.761312
Target:  5'- cGCGAAuUCCGCaaugGCGUCGAUcgacGGAUCg -3'
miRNA:   3'- uCGUUUuGGGCGg---CGCAGCUA----CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 52324 0.68 0.750856
Target:  5'- -uCGAAACCCGgcagCGCGUCGGUacuACCg -3'
miRNA:   3'- ucGUUUUGGGCg---GCGCAGCUAcu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 7891 0.68 0.729583
Target:  5'- cGGCAAG--CCGauCgGCGUCGGUGAACg -3'
miRNA:   3'- -UCGUUUugGGC--GgCGCAGCUACUUGg -5'
12141 5' -52.6 NC_003309.1 + 49971 0.68 0.729583
Target:  5'- uGUcGAGCCCGCUGaaauucacCGUCGAUucggcggccGAGCCg -3'
miRNA:   3'- uCGuUUUGGGCGGC--------GCAGCUA---------CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 33951 0.68 0.729583
Target:  5'- uGU--GACCgCGCCGCGccCGcUGGACCg -3'
miRNA:   3'- uCGuuUUGG-GCGGCGCa-GCuACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 41404 0.69 0.71879
Target:  5'- cGCAAGGCaCCGCC-CGUCGAaucgaaGAAgCg -3'
miRNA:   3'- uCGUUUUG-GGCGGcGCAGCUa-----CUUgG- -5'
12141 5' -52.6 NC_003309.1 + 10714 0.69 0.707908
Target:  5'- gAGCGAAGCCuCGgCGCGcUCGAgcu-CCu -3'
miRNA:   3'- -UCGUUUUGG-GCgGCGC-AGCUacuuGG- -5'
12141 5' -52.6 NC_003309.1 + 34682 0.69 0.696949
Target:  5'- aGGUuaccuACCUGuCCGCGUCGcugcugucUGAACCg -3'
miRNA:   3'- -UCGuuu--UGGGC-GGCGCAGCu-------ACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 10903 0.69 0.685926
Target:  5'- cAGC----CCCGCCGCGgUCGcgGucGCCg -3'
miRNA:   3'- -UCGuuuuGGGCGGCGC-AGCuaCu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 9728 0.69 0.67485
Target:  5'- cAGCuc-GgCCGUCGCGUCGAgcgGuuGCCg -3'
miRNA:   3'- -UCGuuuUgGGCGGCGCAGCUa--Cu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 7306 0.7 0.652584
Target:  5'- -uCGAAAUCCGCaCGCagGUCGgcGAGCCc -3'
miRNA:   3'- ucGUUUUGGGCG-GCG--CAGCuaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 9540 0.7 0.651468
Target:  5'- cGCGGAucgaacuGCgCGCCGCGUCGAgcgcgcgcACCg -3'
miRNA:   3'- uCGUUU-------UGgGCGGCGCAGCUacu-----UGG- -5'
12141 5' -52.6 NC_003309.1 + 2417 0.7 0.63024
Target:  5'- cAGCAGGACaC-CCGCaaCGAUGAGCCc -3'
miRNA:   3'- -UCGUUUUGgGcGGCGcaGCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 12508 0.7 0.63024
Target:  5'- cGGCGAAACUCGUCGCucacgCGAUuGAugGCCu -3'
miRNA:   3'- -UCGUUUUGGGCGGCGca---GCUA-CU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 19395 0.7 0.63024
Target:  5'- -aCGAuGCCCGCCGCGgucagCGAcacGACCg -3'
miRNA:   3'- ucGUUuUGGGCGGCGCa----GCUac-UUGG- -5'
12141 5' -52.6 NC_003309.1 + 38976 0.7 0.623534
Target:  5'- cGGCAgccgauacguccaucGAACCuuuCGCCGCGUCGAcccaUGcauACCg -3'
miRNA:   3'- -UCGU---------------UUUGG---GCGGCGCAGCU----ACu--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.