miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12141 5' -52.6 NC_003309.1 + 10714 0.69 0.707908
Target:  5'- gAGCGAAGCCuCGgCGCGcUCGAgcu-CCu -3'
miRNA:   3'- -UCGUUUUGG-GCgGCGC-AGCUacuuGG- -5'
12141 5' -52.6 NC_003309.1 + 41404 0.69 0.71879
Target:  5'- cGCAAGGCaCCGCC-CGUCGAaucgaaGAAgCg -3'
miRNA:   3'- uCGUUUUG-GGCGGcGCAGCUa-----CUUgG- -5'
12141 5' -52.6 NC_003309.1 + 33951 0.68 0.729583
Target:  5'- uGU--GACCgCGCCGCGccCGcUGGACCg -3'
miRNA:   3'- uCGuuUUGG-GCGGCGCa-GCuACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 49971 0.68 0.729583
Target:  5'- uGUcGAGCCCGCUGaaauucacCGUCGAUucggcggccGAGCCg -3'
miRNA:   3'- uCGuUUUGGGCGGC--------GCAGCUA---------CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 7891 0.68 0.729583
Target:  5'- cGGCAAG--CCGauCgGCGUCGGUGAACg -3'
miRNA:   3'- -UCGUUUugGGC--GgCGCAGCUACUUGg -5'
12141 5' -52.6 NC_003309.1 + 52324 0.68 0.750856
Target:  5'- -uCGAAACCCGgcagCGCGUCGGUacuACCg -3'
miRNA:   3'- ucGUUUUGGGCg---GCGCAGCUAcu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 16881 0.68 0.761312
Target:  5'- --aAGAGCCCGCCGCGcuugcugcCGAcGAuuACCg -3'
miRNA:   3'- ucgUUUUGGGCGGCGCa-------GCUaCU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 19178 0.68 0.761312
Target:  5'- cGGCGAcguAGCUCGUCGCGU-GGUucGCCg -3'
miRNA:   3'- -UCGUU---UUGGGCGGCGCAgCUAcuUGG- -5'
12141 5' -52.6 NC_003309.1 + 46579 0.68 0.761312
Target:  5'- cGCGAAuUCCGCaaugGCGUCGAUcgacGGAUCg -3'
miRNA:   3'- uCGUUUuGGGCGg---CGCAGCUA----CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 11828 0.68 0.765456
Target:  5'- cGCGc-GCCCGCCGCGgcuuucgaauccuugUCGgcGAucGCCu -3'
miRNA:   3'- uCGUuuUGGGCGGCGC---------------AGCuaCU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 30379 0.68 0.771631
Target:  5'- aAGCGAAaaagGCCgGCCuCGUCGG-GAAUCc -3'
miRNA:   3'- -UCGUUU----UGGgCGGcGCAGCUaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 40501 0.68 0.771631
Target:  5'- uGCGGAcgugguCUgGCCGCGgCGAggGAGCCa -3'
miRNA:   3'- uCGUUUu-----GGgCGGCGCaGCUa-CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 34163 0.68 0.771631
Target:  5'- cGCugcGCCCG-CGCGaaacgCGAUGAGCUu -3'
miRNA:   3'- uCGuuuUGGGCgGCGCa----GCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 525 0.68 0.771631
Target:  5'- aGGCGcugccGGCUCGCCGgGUCGAgccccagcauUGcGCCg -3'
miRNA:   3'- -UCGUu----UUGGGCGGCgCAGCU----------ACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 10257 0.68 0.771631
Target:  5'- cGGCGAuccGCCCaGCCGCGagCGAcacGCCg -3'
miRNA:   3'- -UCGUUu--UGGG-CGGCGCa-GCUacuUGG- -5'
12141 5' -52.6 NC_003309.1 + 4143 0.67 0.781801
Target:  5'- cGCGcu-CCCGCCGUugcuGUCGAUgucGAGCa -3'
miRNA:   3'- uCGUuuuGGGCGGCG----CAGCUA---CUUGg -5'
12141 5' -52.6 NC_003309.1 + 12619 0.67 0.791812
Target:  5'- cGCGcGACCUgcuccgccucgGCCGUGUUGAUGcGCUc -3'
miRNA:   3'- uCGUuUUGGG-----------CGGCGCAGCUACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 16545 0.67 0.791812
Target:  5'- cGCcccACaCCGCgCGCGUCGAUaggcGACCg -3'
miRNA:   3'- uCGuuuUG-GGCG-GCGCAGCUAc---UUGG- -5'
12141 5' -52.6 NC_003309.1 + 45585 0.67 0.801651
Target:  5'- cGCAGAGCCCGUaUGCGgaCGAgcauGCCg -3'
miRNA:   3'- uCGUUUUGGGCG-GCGCa-GCUacu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 46078 0.67 0.801651
Target:  5'- uAGCAuccucGGugUgGCCGaCGUCGAgcaugcGAGCCa -3'
miRNA:   3'- -UCGU-----UUugGgCGGC-GCAGCUa-----CUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.