miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12141 5' -52.6 NC_003309.1 + 24414 1.13 0.000975
Target:  5'- gAGCAAAACCCGCCGCGUCGAUGAACCg -3'
miRNA:   3'- -UCGUUUUGGGCGGCGCAGCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 11502 0.86 0.076795
Target:  5'- cGCGAGGCUCGCCGUGUCGAUcGcGCCg -3'
miRNA:   3'- uCGUUUUGGGCGGCGCAGCUA-CuUGG- -5'
12141 5' -52.6 NC_003309.1 + 1768 0.76 0.298202
Target:  5'- cGCAgaaguAAugCCGCCGCccGUCGAUGucguGCCa -3'
miRNA:   3'- uCGU-----UUugGGCGGCG--CAGCUACu---UGG- -5'
12141 5' -52.6 NC_003309.1 + 23982 0.76 0.305827
Target:  5'- gAGCGGAACgCGCCGCGacgaUCGGUGccCCu -3'
miRNA:   3'- -UCGUUUUGgGCGGCGC----AGCUACuuGG- -5'
12141 5' -52.6 NC_003309.1 + 11973 0.76 0.305827
Target:  5'- cGCGGcGCgCGCCGCGUCGGcguUGAAgCCg -3'
miRNA:   3'- uCGUUuUGgGCGGCGCAGCU---ACUU-GG- -5'
12141 5' -52.6 NC_003309.1 + 31643 0.76 0.329593
Target:  5'- cGCAGuGCCCGCuCGCGugcgcuuccugUCGAUgGAGCCu -3'
miRNA:   3'- uCGUUuUGGGCG-GCGC-----------AGCUA-CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 8260 0.76 0.337812
Target:  5'- cGCGAAugUCGUCGCGUCGAUuu-CCu -3'
miRNA:   3'- uCGUUUugGGCGGCGCAGCUAcuuGG- -5'
12141 5' -52.6 NC_003309.1 + 22006 0.74 0.399442
Target:  5'- cGuCAGGACCgGCucCGCGugcUCGAUGAGCCg -3'
miRNA:   3'- uC-GUUUUGGgCG--GCGC---AGCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 15847 0.72 0.541695
Target:  5'- --aAAAACCCGCCGUGUgGcgGGuCCu -3'
miRNA:   3'- ucgUUUUGGGCGGCGCAgCuaCUuGG- -5'
12141 5' -52.6 NC_003309.1 + 12067 0.71 0.585651
Target:  5'- cGCGGGcCgCCGCgGCGUUGGUGGAUa -3'
miRNA:   3'- uCGUUUuG-GGCGgCGCAGCUACUUGg -5'
12141 5' -52.6 NC_003309.1 + 8176 0.7 0.617948
Target:  5'- ---cAGAUCUGCCGCGUCGAgguccguUGAcGCCa -3'
miRNA:   3'- ucguUUUGGGCGGCGCAGCU-------ACU-UGG- -5'
12141 5' -52.6 NC_003309.1 + 38976 0.7 0.623534
Target:  5'- cGGCAgccgauacguccaucGAACCuuuCGCCGCGUCGAcccaUGcauACCg -3'
miRNA:   3'- -UCGU---------------UUUGG---GCGGCGCAGCU----ACu--UGG- -5'
12141 5' -52.6 NC_003309.1 + 2417 0.7 0.63024
Target:  5'- cAGCAGGACaC-CCGCaaCGAUGAGCCc -3'
miRNA:   3'- -UCGUUUUGgGcGGCGcaGCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 19395 0.7 0.63024
Target:  5'- -aCGAuGCCCGCCGCGgucagCGAcacGACCg -3'
miRNA:   3'- ucGUUuUGGGCGGCGCa----GCUac-UUGG- -5'
12141 5' -52.6 NC_003309.1 + 12508 0.7 0.63024
Target:  5'- cGGCGAAACUCGUCGCucacgCGAUuGAugGCCu -3'
miRNA:   3'- -UCGUUUUGGGCGGCGca---GCUA-CU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 9540 0.7 0.651468
Target:  5'- cGCGGAucgaacuGCgCGCCGCGUCGAgcgcgcgcACCg -3'
miRNA:   3'- uCGUUU-------UGgGCGGCGCAGCUacu-----UGG- -5'
12141 5' -52.6 NC_003309.1 + 7306 0.7 0.652584
Target:  5'- -uCGAAAUCCGCaCGCagGUCGgcGAGCCc -3'
miRNA:   3'- ucGUUUUGGGCG-GCG--CAGCuaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 9728 0.69 0.67485
Target:  5'- cAGCuc-GgCCGUCGCGUCGAgcgGuuGCCg -3'
miRNA:   3'- -UCGuuuUgGGCGGCGCAGCUa--Cu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 10903 0.69 0.685926
Target:  5'- cAGC----CCCGCCGCGgUCGcgGucGCCg -3'
miRNA:   3'- -UCGuuuuGGGCGGCGC-AGCuaCu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 34682 0.69 0.696949
Target:  5'- aGGUuaccuACCUGuCCGCGUCGcugcugucUGAACCg -3'
miRNA:   3'- -UCGuuu--UGGGC-GGCGCAGCu-------ACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.