Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12141 | 5' | -52.6 | NC_003309.1 | + | 9540 | 0.7 | 0.651468 |
Target: 5'- cGCGGAucgaacuGCgCGCCGCGUCGAgcgcgcgcACCg -3' miRNA: 3'- uCGUUU-------UGgGCGGCGCAGCUacu-----UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 11502 | 0.86 | 0.076795 |
Target: 5'- cGCGAGGCUCGCCGUGUCGAUcGcGCCg -3' miRNA: 3'- uCGUUUUGGGCGGCGCAGCUA-CuUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 24414 | 1.13 | 0.000975 |
Target: 5'- gAGCAAAACCCGCCGCGUCGAUGAACCg -3' miRNA: 3'- -UCGUUUUGGGCGGCGCAGCUACUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 8260 | 0.76 | 0.337812 |
Target: 5'- cGCGAAugUCGUCGCGUCGAUuu-CCu -3' miRNA: 3'- uCGUUUugGGCGGCGCAGCUAcuuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 23982 | 0.76 | 0.305827 |
Target: 5'- gAGCGGAACgCGCCGCGacgaUCGGUGccCCu -3' miRNA: 3'- -UCGUUUUGgGCGGCGC----AGCUACuuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 11973 | 0.76 | 0.305827 |
Target: 5'- cGCGGcGCgCGCCGCGUCGGcguUGAAgCCg -3' miRNA: 3'- uCGUUuUGgGCGGCGCAGCU---ACUU-GG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 31643 | 0.76 | 0.329593 |
Target: 5'- cGCAGuGCCCGCuCGCGugcgcuuccugUCGAUgGAGCCu -3' miRNA: 3'- uCGUUuUGGGCG-GCGC-----------AGCUA-CUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 1768 | 0.76 | 0.298202 |
Target: 5'- cGCAgaaguAAugCCGCCGCccGUCGAUGucguGCCa -3' miRNA: 3'- uCGU-----UUugGGCGGCG--CAGCUACu---UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 12508 | 0.7 | 0.63024 |
Target: 5'- cGGCGAAACUCGUCGCucacgCGAUuGAugGCCu -3' miRNA: 3'- -UCGUUUUGGGCGGCGca---GCUA-CU--UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 19395 | 0.7 | 0.63024 |
Target: 5'- -aCGAuGCCCGCCGCGgucagCGAcacGACCg -3' miRNA: 3'- ucGUUuUGGGCGGCGCa----GCUac-UUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 2417 | 0.7 | 0.63024 |
Target: 5'- cAGCAGGACaC-CCGCaaCGAUGAGCCc -3' miRNA: 3'- -UCGUUUUGgGcGGCGcaGCUACUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 7306 | 0.7 | 0.652584 |
Target: 5'- -uCGAAAUCCGCaCGCagGUCGgcGAGCCc -3' miRNA: 3'- ucGUUUUGGGCG-GCG--CAGCuaCUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 9728 | 0.69 | 0.67485 |
Target: 5'- cAGCuc-GgCCGUCGCGUCGAgcgGuuGCCg -3' miRNA: 3'- -UCGuuuUgGGCGGCGCAGCUa--Cu-UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 10903 | 0.69 | 0.685926 |
Target: 5'- cAGC----CCCGCCGCGgUCGcgGucGCCg -3' miRNA: 3'- -UCGuuuuGGGCGGCGC-AGCuaCu-UGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 34682 | 0.69 | 0.696949 |
Target: 5'- aGGUuaccuACCUGuCCGCGUCGcugcugucUGAACCg -3' miRNA: 3'- -UCGuuu--UGGGC-GGCGCAGCu-------ACUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 10714 | 0.69 | 0.707908 |
Target: 5'- gAGCGAAGCCuCGgCGCGcUCGAgcu-CCu -3' miRNA: 3'- -UCGUUUUGG-GCgGCGC-AGCUacuuGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 41404 | 0.69 | 0.71879 |
Target: 5'- cGCAAGGCaCCGCC-CGUCGAaucgaaGAAgCg -3' miRNA: 3'- uCGUUUUG-GGCGGcGCAGCUa-----CUUgG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 33951 | 0.68 | 0.729583 |
Target: 5'- uGU--GACCgCGCCGCGccCGcUGGACCg -3' miRNA: 3'- uCGuuUUGG-GCGGCGCa-GCuACUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 49971 | 0.68 | 0.729583 |
Target: 5'- uGUcGAGCCCGCUGaaauucacCGUCGAUucggcggccGAGCCg -3' miRNA: 3'- uCGuUUUGGGCGGC--------GCAGCUA---------CUUGG- -5' |
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12141 | 5' | -52.6 | NC_003309.1 | + | 7891 | 0.68 | 0.729583 |
Target: 5'- cGGCAAG--CCGauCgGCGUCGGUGAACg -3' miRNA: 3'- -UCGUUUugGGC--GgCGCAGCUACUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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