miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12141 5' -52.6 NC_003309.1 + 525 0.68 0.771631
Target:  5'- aGGCGcugccGGCUCGCCGgGUCGAgccccagcauUGcGCCg -3'
miRNA:   3'- -UCGUu----UUGGGCGGCgCAGCU----------ACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 1768 0.76 0.298202
Target:  5'- cGCAgaaguAAugCCGCCGCccGUCGAUGucguGCCa -3'
miRNA:   3'- uCGU-----UUugGGCGGCG--CAGCUACu---UGG- -5'
12141 5' -52.6 NC_003309.1 + 2417 0.7 0.63024
Target:  5'- cAGCAGGACaC-CCGCaaCGAUGAGCCc -3'
miRNA:   3'- -UCGUUUUGgGcGGCGcaGCUACUUGG- -5'
12141 5' -52.6 NC_003309.1 + 4143 0.67 0.781801
Target:  5'- cGCGcu-CCCGCCGUugcuGUCGAUgucGAGCa -3'
miRNA:   3'- uCGUuuuGGGCGGCG----CAGCUA---CUUGg -5'
12141 5' -52.6 NC_003309.1 + 7187 0.67 0.801651
Target:  5'- cGUAAAGCCUGCCGuCGUaaCGAauacgcaucUGGucGCCg -3'
miRNA:   3'- uCGUUUUGGGCGGC-GCA--GCU---------ACU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 7306 0.7 0.652584
Target:  5'- -uCGAAAUCCGCaCGCagGUCGgcGAGCCc -3'
miRNA:   3'- ucGUUUUGGGCG-GCG--CAGCuaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 7891 0.68 0.729583
Target:  5'- cGGCAAG--CCGauCgGCGUCGGUGAACg -3'
miRNA:   3'- -UCGUUUugGGC--GgCGCAGCUACUUGg -5'
12141 5' -52.6 NC_003309.1 + 8176 0.7 0.617948
Target:  5'- ---cAGAUCUGCCGCGUCGAgguccguUGAcGCCa -3'
miRNA:   3'- ucguUUUGGGCGGCGCAGCU-------ACU-UGG- -5'
12141 5' -52.6 NC_003309.1 + 8260 0.76 0.337812
Target:  5'- cGCGAAugUCGUCGCGUCGAUuu-CCu -3'
miRNA:   3'- uCGUUUugGGCGGCGCAGCUAcuuGG- -5'
12141 5' -52.6 NC_003309.1 + 9540 0.7 0.651468
Target:  5'- cGCGGAucgaacuGCgCGCCGCGUCGAgcgcgcgcACCg -3'
miRNA:   3'- uCGUUU-------UGgGCGGCGCAGCUacu-----UGG- -5'
12141 5' -52.6 NC_003309.1 + 9728 0.69 0.67485
Target:  5'- cAGCuc-GgCCGUCGCGUCGAgcgGuuGCCg -3'
miRNA:   3'- -UCGuuuUgGGCGGCGCAGCUa--Cu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 10056 0.66 0.847888
Target:  5'- uGCc--GCCCGCCGCGcgcgucagcgccUCGAcGAgauuACCg -3'
miRNA:   3'- uCGuuuUGGGCGGCGC------------AGCUaCU----UGG- -5'
12141 5' -52.6 NC_003309.1 + 10257 0.68 0.771631
Target:  5'- cGGCGAuccGCCCaGCCGCGagCGAcacGCCg -3'
miRNA:   3'- -UCGUUu--UGGG-CGGCGCa-GCUacuUGG- -5'
12141 5' -52.6 NC_003309.1 + 10714 0.69 0.707908
Target:  5'- gAGCGAAGCCuCGgCGCGcUCGAgcu-CCu -3'
miRNA:   3'- -UCGUUUUGG-GCgGCGC-AGCUacuuGG- -5'
12141 5' -52.6 NC_003309.1 + 10903 0.69 0.685926
Target:  5'- cAGC----CCCGCCGCGgUCGcgGucGCCg -3'
miRNA:   3'- -UCGuuuuGGGCGGCGC-AGCuaCu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 11502 0.86 0.076795
Target:  5'- cGCGAGGCUCGCCGUGUCGAUcGcGCCg -3'
miRNA:   3'- uCGUUUUGGGCGGCGCAGCUA-CuUGG- -5'
12141 5' -52.6 NC_003309.1 + 11828 0.68 0.765456
Target:  5'- cGCGc-GCCCGCCGCGgcuuucgaauccuugUCGgcGAucGCCu -3'
miRNA:   3'- uCGUuuUGGGCGGCGC---------------AGCuaCU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 11973 0.76 0.305827
Target:  5'- cGCGGcGCgCGCCGCGUCGGcguUGAAgCCg -3'
miRNA:   3'- uCGUUuUGgGCGGCGCAGCU---ACUU-GG- -5'
12141 5' -52.6 NC_003309.1 + 12067 0.71 0.585651
Target:  5'- cGCGGGcCgCCGCgGCGUUGGUGGAUa -3'
miRNA:   3'- uCGUUUuG-GGCGgCGCAGCUACUUGg -5'
12141 5' -52.6 NC_003309.1 + 12508 0.7 0.63024
Target:  5'- cGGCGAAACUCGUCGCucacgCGAUuGAugGCCu -3'
miRNA:   3'- -UCGUUUUGGGCGGCGca---GCUA-CU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.