miRNA display CGI

Results 1 - 7 of 7 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12146	5'	-57.6	NC_003309.1	+	9737	0.66	0.612994
	Target:  5'- cCGCuGAuacaGCUcGGCcgUCGCGuCGAGCGGu -3' miRNA:   3'- -GCGuCUc---CGAaCCG--AGCGC-GCUUGCC- -5'
12146	5'	-57.6	NC_003309.1	+	37248	0.66	0.576459
	Target:  5'- gGCAGGGGCaaGGCggcgcuacagcagCGCGUcgaGGACGa -3' miRNA:   3'- gCGUCUCCGaaCCGa------------GCGCG---CUUGCc -5'
12146	5'	-57.6	NC_003309.1	+	15336	0.67	0.559424
	Target:  5'- cCGCAGcgucGGCgaUGGCUgcUGCGCGu-CGGa -3' miRNA:   3'- -GCGUCu---CCGa-ACCGA--GCGCGCuuGCC- -5'
12146	5'	-57.6	NC_003309.1	+	28811	0.68	0.497044
	Target:  5'- cCGCGGgauAGaGCUgcaacaUCGCGCGAGCGGc -3' miRNA:   3'- -GCGUC---UC-CGAaccg--AGCGCGCUUGCC- -5'
12146	5'	-57.6	NC_003309.1	+	9027	0.7	0.383154
	Target:  5'- aGCGGAGGCcuggGGUUCG-GCGGAaGGc -3' miRNA:   3'- gCGUCUCCGaa--CCGAGCgCGCUUgCC- -5'
12146	5'	-57.6	NC_003309.1	+	668	0.73	0.247815
	Target:  5'- aCGCAGGGcGCUUGccacgaacgacGuCUCGCGCGAACu- -3' miRNA:   3'- -GCGUCUC-CGAAC-----------C-GAGCGCGCUUGcc -5'
12146	5'	-57.6	NC_003309.1	+	26492	1.1	0.000531
	Target:  5'- aCGCAGAGGCUUGGCUCGCGCGAACGGc -3' miRNA:   3'- -GCGUCUCCGAACCGAGCGCGCUUGCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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