miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12153 3' -58.8 NC_003309.1 + 32992 1.1 0.000335
Target:  5'- cAUCCGCAUCUUCGCAGCCCGCACCGCg -3'
miRNA:   3'- -UAGGCGUAGAAGCGUCGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 53066 0.79 0.070363
Target:  5'- uUCCGUAUCcUCGCGcaugacgauuGCCgCGCACCGCg -3'
miRNA:   3'- uAGGCGUAGaAGCGU----------CGG-GCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 11988 0.72 0.206418
Target:  5'- -cCCGCGcgCggcagcCGCGGCgCGCGCCGCg -3'
miRNA:   3'- uaGGCGUa-Gaa----GCGUCGgGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 3462 0.72 0.211906
Target:  5'- gGUCgCGCGUCUUCGCcuGCUCaUGCCGCu -3'
miRNA:   3'- -UAG-GCGUAGAAGCGu-CGGGcGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 9469 0.72 0.223258
Target:  5'- -gCCGCAUCgcugUGC-GCCCGCcgucgcgcACCGCa -3'
miRNA:   3'- uaGGCGUAGaa--GCGuCGGGCG--------UGGCG- -5'
12153 3' -58.8 NC_003309.1 + 20041 0.71 0.235124
Target:  5'- gGUCgGCGUacgaCUUCGCgacGGUuuGCACCGCc -3'
miRNA:   3'- -UAGgCGUA----GAAGCG---UCGggCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 10480 0.71 0.240634
Target:  5'- uUCgCGCAUCgcgCGCaugccgcgaguucGGCCUGCGCUGCc -3'
miRNA:   3'- uAG-GCGUAGaa-GCG-------------UCGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 35685 0.71 0.241253
Target:  5'- gGUCUGCG-CgaaaaGCuGCUCGCACCGCg -3'
miRNA:   3'- -UAGGCGUaGaag--CGuCGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 15002 0.71 0.253909
Target:  5'- -gCCGCccCUUCGaCGGCCCGCucUCGCc -3'
miRNA:   3'- uaGGCGuaGAAGC-GUCGGGCGu-GGCG- -5'
12153 3' -58.8 NC_003309.1 + 46421 0.71 0.26044
Target:  5'- uUCCGCGUCgucaaUaccgagcacccaUCGCAGCCCGCcaAgCGCu -3'
miRNA:   3'- uAGGCGUAG-----A------------AGCGUCGGGCG--UgGCG- -5'
12153 3' -58.8 NC_003309.1 + 10969 0.71 0.26044
Target:  5'- --gCGCAUCaUCGU-GCCCGUACgCGCg -3'
miRNA:   3'- uagGCGUAGaAGCGuCGGGCGUG-GCG- -5'
12153 3' -58.8 NC_003309.1 + 13939 0.7 0.280853
Target:  5'- -cCCGCAUCUgCGauccaCAGCCCGaACCGUu -3'
miRNA:   3'- uaGGCGUAGAaGC-----GUCGGGCgUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 9523 0.7 0.280853
Target:  5'- -gCCGCGUCga-GC-GCgCGCACCGUg -3'
miRNA:   3'- uaGGCGUAGaagCGuCGgGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 49168 0.7 0.280853
Target:  5'- cUCC-CAUCUuUCG-AGCCCGUACCGg -3'
miRNA:   3'- uAGGcGUAGA-AGCgUCGGGCGUGGCg -5'
12153 3' -58.8 NC_003309.1 + 12817 0.7 0.2937
Target:  5'- aGUCCGCGgaaauugaGCuuGCCCGaCGCCGCg -3'
miRNA:   3'- -UAGGCGUagaag---CGu-CGGGC-GUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 39265 0.7 0.295155
Target:  5'- -gUUGCGUCgccagcgCGCAGCCCGCggaucagcAUCGCg -3'
miRNA:   3'- uaGGCGUAGaa-----GCGUCGGGCG--------UGGCG- -5'
12153 3' -58.8 NC_003309.1 + 11281 0.7 0.302516
Target:  5'- cGUCgGCAccaugacaCUUUGCGccGCCCGCAUCGCc -3'
miRNA:   3'- -UAGgCGUa-------GAAGCGU--CGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 28964 0.69 0.310018
Target:  5'- ---gGCAUCUugaUCGCgaggaAGCCCGCcACCGUg -3'
miRNA:   3'- uaggCGUAGA---AGCG-----UCGGGCG-UGGCG- -5'
12153 3' -58.8 NC_003309.1 + 20297 0.69 0.310018
Target:  5'- -aUCGCGUUcgugaUC-CAGCCCGCACCGa -3'
miRNA:   3'- uaGGCGUAGa----AGcGUCGGGCGUGGCg -5'
12153 3' -58.8 NC_003309.1 + 31945 0.69 0.325444
Target:  5'- --gCGCAcgaacaguUCUUCGCcGCCCGCgGCCGg -3'
miRNA:   3'- uagGCGU--------AGAAGCGuCGGGCG-UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.