miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12153 3' -58.8 NC_003309.1 + 3462 0.72 0.211906
Target:  5'- gGUCgCGCGUCUUCGCcuGCUCaUGCCGCu -3'
miRNA:   3'- -UAG-GCGUAGAAGCGu-CGGGcGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 4701 0.66 0.488507
Target:  5'- -cCUGCAUgUucaUCGCGGCCgCGCgaGCCGa -3'
miRNA:   3'- uaGGCGUAgA---AGCGUCGG-GCG--UGGCg -5'
12153 3' -58.8 NC_003309.1 + 6174 0.67 0.426766
Target:  5'- cUCCGaua---CGCGGCCCGCucacaaauugacggGCCGCg -3'
miRNA:   3'- uAGGCguagaaGCGUCGGGCG--------------UGGCG- -5'
12153 3' -58.8 NC_003309.1 + 7222 0.66 0.478417
Target:  5'- -cCCGCGUUUgCGC-GCCggcaGUACCGCc -3'
miRNA:   3'- uaGGCGUAGAaGCGuCGGg---CGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 9469 0.72 0.223258
Target:  5'- -gCCGCAUCgcugUGC-GCCCGCcgucgcgcACCGCa -3'
miRNA:   3'- uaGGCGUAGaa--GCGuCGGGCG--------UGGCG- -5'
12153 3' -58.8 NC_003309.1 + 9523 0.7 0.280853
Target:  5'- -gCCGCGUCga-GC-GCgCGCACCGUg -3'
miRNA:   3'- uaGGCGUAGaagCGuCGgGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 10085 0.68 0.357982
Target:  5'- cGUCUGCAUUUUCucgaaCAGCguauCCGUGCCGCc -3'
miRNA:   3'- -UAGGCGUAGAAGc----GUCG----GGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 10386 0.67 0.429601
Target:  5'- -cCUGCGcUUUggcgagCGCcGCCUGCGCCGCc -3'
miRNA:   3'- uaGGCGU-AGAa-----GCGuCGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 10480 0.71 0.240634
Target:  5'- uUCgCGCAUCgcgCGCaugccgcgaguucGGCCUGCGCUGCc -3'
miRNA:   3'- uAG-GCGUAGaa-GCG-------------UCGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 10899 0.67 0.45855
Target:  5'- -cCCGCcgCggUCGCGGUcgCCGCGcguuCCGCu -3'
miRNA:   3'- uaGGCGuaGa-AGCGUCG--GGCGU----GGCG- -5'
12153 3' -58.8 NC_003309.1 + 10969 0.71 0.26044
Target:  5'- --gCGCAUCaUCGU-GCCCGUACgCGCg -3'
miRNA:   3'- uagGCGUAGaAGCGuCGGGCGUG-GCG- -5'
12153 3' -58.8 NC_003309.1 + 11281 0.7 0.302516
Target:  5'- cGUCgGCAccaugacaCUUUGCGccGCCCGCAUCGCc -3'
miRNA:   3'- -UAGgCGUa-------GAAGCGU--CGGGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 11590 0.66 0.478417
Target:  5'- uGUUCGCGUCcgacaGCAGCCgCaCGCCGUc -3'
miRNA:   3'- -UAGGCGUAGaag--CGUCGG-GcGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 11988 0.72 0.206418
Target:  5'- -cCCGCGcgCggcagcCGCGGCgCGCGCCGCg -3'
miRNA:   3'- uaGGCGUa-Gaa----GCGUCGgGCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 12817 0.7 0.2937
Target:  5'- aGUCCGCGgaaauugaGCuuGCCCGaCGCCGCg -3'
miRNA:   3'- -UAGGCGUagaag---CGu-CGGGC-GUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 13939 0.7 0.280853
Target:  5'- -cCCGCAUCUgCGauccaCAGCCCGaACCGUu -3'
miRNA:   3'- uaGGCGUAGAaGC-----GUCGGGCgUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 15002 0.71 0.253909
Target:  5'- -gCCGCccCUUCGaCGGCCCGCucUCGCc -3'
miRNA:   3'- uaGGCGuaGAAGC-GUCGGGCGu-GGCG- -5'
12153 3' -58.8 NC_003309.1 + 18470 0.66 0.468429
Target:  5'- cGUCCuGCAcggCUUCGaCAGCCUGCugUa- -3'
miRNA:   3'- -UAGG-CGUa--GAAGC-GUCGGGCGugGcg -5'
12153 3' -58.8 NC_003309.1 + 19951 0.69 0.349638
Target:  5'- gAUCCGCuUCgacgCGCGcgaucgcuuccGUuuGCACCGCg -3'
miRNA:   3'- -UAGGCGuAGaa--GCGU-----------CGggCGUGGCG- -5'
12153 3' -58.8 NC_003309.1 + 20041 0.71 0.235124
Target:  5'- gGUCgGCGUacgaCUUCGCgacGGUuuGCACCGCc -3'
miRNA:   3'- -UAGgCGUA----GAAGCG---UCGggCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.