miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 19386 0.74 0.451301
Target:  5'- gCCGCGGUCaGCgACACGaCcgACGGCGGc -3'
miRNA:   3'- -GGCGCUAG-CG-UGUGCcGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 19499 0.73 0.512542
Target:  5'- aUCGCGucGUCGCGauuCGGCGUGCGGCu- -3'
miRNA:   3'- -GGCGC--UAGCGUgu-GCCGUAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 19784 0.69 0.740499
Target:  5'- cCCGCGuaaaucGUCGCGuCGcCGGCcauCGGCGGg -3'
miRNA:   3'- -GGCGC------UAGCGU-GU-GCCGuauGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 19835 0.68 0.781496
Target:  5'- uCgGCGAUCGCcgacuGCAacgaccagacgcCGGCAUugAGCGu -3'
miRNA:   3'- -GgCGCUAGCG-----UGU------------GCCGUAugUUGCc -5'
12157 5' -52.5 NC_003309.1 + 19936 0.69 0.738397
Target:  5'- gCGCGAUCGCuuccguuugcacCGCGGCGcuCAGCaGGu -3'
miRNA:   3'- gGCGCUAGCGu-----------GUGCCGUauGUUG-CC- -5'
12157 5' -52.5 NC_003309.1 + 20060 0.66 0.862801
Target:  5'- gCCGCGAcaCGCcCGuucagguCGGCGUACGACu- -3'
miRNA:   3'- -GGCGCUa-GCGuGU-------GCCGUAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 21773 0.67 0.846842
Target:  5'- aUCGUGAugcUCcaguuCACGCaGGCGUGCAGCGa -3'
miRNA:   3'- -GGCGCU---AGc----GUGUG-CCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 22453 0.75 0.403465
Target:  5'- gCgGCGAUCGCACGCuGCcgGCGucgagcGCGGc -3'
miRNA:   3'- -GgCGCUAGCGUGUGcCGuaUGU------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 24337 0.67 0.85282
Target:  5'- aCGCGAccuuucauguauucUCGCGCACcGUAcACGGCGa -3'
miRNA:   3'- gGCGCU--------------AGCGUGUGcCGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 26345 0.66 0.894204
Target:  5'- -aGCGAcgCGCGCACG----ACGACGGc -3'
miRNA:   3'- ggCGCUa-GCGUGUGCcguaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 28485 0.72 0.576936
Target:  5'- cCCGCGcgC-CACGcCGGCccGUAUAGCGGc -3'
miRNA:   3'- -GGCGCuaGcGUGU-GCCG--UAUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 28812 0.67 0.84163
Target:  5'- cCCGCGGgauagagcugcaacaUCGCGCgaGCGGCuu-CAGCa- -3'
miRNA:   3'- -GGCGCU---------------AGCGUG--UGCCGuauGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 30902 0.67 0.838111
Target:  5'- uCUGCGAaagGCu--CGGCGUACAACGu -3'
miRNA:   3'- -GGCGCUag-CGuguGCCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 31001 0.68 0.81065
Target:  5'- cUCGCcaGAUCGCGaGCGGC-UACAACc- -3'
miRNA:   3'- -GGCG--CUAGCGUgUGCCGuAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 31484 0.66 0.863617
Target:  5'- -gGUGAUCGCcgGCGGCGaa-AGCGGc -3'
miRNA:   3'- ggCGCUAGCGugUGCCGUaugUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 32930 0.67 0.838111
Target:  5'- aUCGCGGcaaGCAacaACGGCuAUGCGGcCGGa -3'
miRNA:   3'- -GGCGCUag-CGUg--UGCCG-UAUGUU-GCC- -5'
12157 5' -52.5 NC_003309.1 + 34433 0.71 0.620874
Target:  5'- aCCGUGGagaGCGCgAUGGCGUAguACGGc -3'
miRNA:   3'- -GGCGCUag-CGUG-UGCCGUAUguUGCC- -5'
12157 5' -52.5 NC_003309.1 + 35364 1.13 0.001207
Target:  5'- gCCGCGAUCGCACACGGCAUACAACGGa -3'
miRNA:   3'- -GGCGCUAGCGUGUGCCGUAUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 37310 0.67 0.817219
Target:  5'- gCGCGAUCGUGCGCGacgcccugaaucucGCcgGCGcgucgaugGCGGu -3'
miRNA:   3'- gGCGCUAGCGUGUGC--------------CGuaUGU--------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 39245 0.67 0.836339
Target:  5'- cCCGCGGaucagcaUCGCGCACgaaGGUcgACGaagugcucgccgaACGGg -3'
miRNA:   3'- -GGCGCU-------AGCGUGUG---CCGuaUGU-------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.