miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 1221 0.69 0.729946
Target:  5'- uCCaCGAUCGCACACGacg-GCGACGc -3'
miRNA:   3'- -GGcGCUAGCGUGUGCcguaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 5381 0.66 0.894204
Target:  5'- gCCGaCGAUCGCGCcacccuucaGGCGcGgGAUGGu -3'
miRNA:   3'- -GGC-GCUAGCGUGug-------CCGUaUgUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 5584 0.68 0.804946
Target:  5'- gUCGCGAaugaacgccuugucuUCGCGCGCGcCGaucGCGGCGGu -3'
miRNA:   3'- -GGCGCU---------------AGCGUGUGCcGUa--UGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 6751 0.69 0.729946
Target:  5'- aCgGCGcgCGCAUACGGC---CAACGu -3'
miRNA:   3'- -GgCGCuaGCGUGUGCCGuauGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 7222 0.67 0.846842
Target:  5'- cCCGCGuUUGCGCGCcGGCAgUACcGCc- -3'
miRNA:   3'- -GGCGCuAGCGUGUG-CCGU-AUGuUGcc -5'
12157 5' -52.5 NC_003309.1 + 8556 0.7 0.697744
Target:  5'- uCUGCGAUCGgggaguUACGCcGCcgGCGGCGGc -3'
miRNA:   3'- -GGCGCUAGC------GUGUGcCGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 9453 0.71 0.620874
Target:  5'- cCCGCcGUCGCGCACcGCAUugAaauACGa -3'
miRNA:   3'- -GGCGcUAGCGUGUGcCGUAugU---UGCc -5'
12157 5' -52.5 NC_003309.1 + 9702 0.66 0.886944
Target:  5'- gCCGUGuGUCGCGCGCGauGC--GCAGCa- -3'
miRNA:   3'- -GGCGC-UAGCGUGUGC--CGuaUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 10491 0.7 0.675936
Target:  5'- aUCGCGAggcuuUCGCGCaucGCGcGCAUGCcGCGa -3'
miRNA:   3'- -GGCGCU-----AGCGUG---UGC-CGUAUGuUGCc -5'
12157 5' -52.5 NC_003309.1 + 10638 0.7 0.694486
Target:  5'- cCCGCGAU-GCGCGCGccgauuuccugacuGCcgGCAACGu -3'
miRNA:   3'- -GGCGCUAgCGUGUGC--------------CGuaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 11975 0.71 0.620874
Target:  5'- gCCGCGG-CGCGCGCcGCGU-CGGCGu -3'
miRNA:   3'- -GGCGCUaGCGUGUGcCGUAuGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 12068 0.71 0.609852
Target:  5'- aCGCGGgcCGC-CGCGGCGUugGugGa -3'
miRNA:   3'- gGCGCUa-GCGuGUGCCGUAugUugCc -5'
12157 5' -52.5 NC_003309.1 + 12629 0.66 0.886944
Target:  5'- gCCGCGcUCGCGCGCGaccuGCuccGCcuCGGc -3'
miRNA:   3'- -GGCGCuAGCGUGUGC----CGua-UGuuGCC- -5'
12157 5' -52.5 NC_003309.1 + 12790 0.66 0.863617
Target:  5'- gCCGCGAaCGaCACGagugcauccuCGGCAUu--GCGGa -3'
miRNA:   3'- -GGCGCUaGC-GUGU----------GCCGUAuguUGCC- -5'
12157 5' -52.5 NC_003309.1 + 13635 0.67 0.855347
Target:  5'- uCCGCGggCGCGaagcgGCGGCGUccaguagaACGACu- -3'
miRNA:   3'- -GGCGCuaGCGUg----UGCCGUA--------UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 16689 0.67 0.829163
Target:  5'- uUCGCGGUCGaugaaACGGCGagACGAUGa -3'
miRNA:   3'- -GGCGCUAGCgug--UGCCGUa-UGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 16929 0.7 0.653962
Target:  5'- gUCGCGAUCGCGC-CGaCA-GCGACGa -3'
miRNA:   3'- -GGCGCUAGCGUGuGCcGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 17756 0.69 0.750942
Target:  5'- gCCGUuuuUCGCGCGCGGCAgcuCGAUc- -3'
miRNA:   3'- -GGCGcu-AGCGUGUGCCGUau-GUUGcc -5'
12157 5' -52.5 NC_003309.1 + 18478 0.67 0.855347
Target:  5'- cCCGUcGUCGUccuGCACGGCuucgACAGCc- -3'
miRNA:   3'- -GGCGcUAGCG---UGUGCCGua--UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 18725 0.68 0.761264
Target:  5'- gCGUGAUCGUcucGC-CGGC-UGCGgcGCGGa -3'
miRNA:   3'- gGCGCUAGCG---UGuGCCGuAUGU--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.