miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 35364 1.13 0.001207
Target:  5'- gCCGCGAUCGCACACGGCAUACAACGGa -3'
miRNA:   3'- -GGCGCUAGCGUGUGCCGUAUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 50633 0.76 0.367585
Target:  5'- uCCGUGAUUGCGCAaGGCAauUGCAGCc- -3'
miRNA:   3'- -GGCGCUAGCGUGUgCCGU--AUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 22453 0.75 0.403465
Target:  5'- gCgGCGAUCGCACGCuGCcgGCGucgagcGCGGc -3'
miRNA:   3'- -GgCGCUAGCGUGUGcCGuaUGU------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 44182 0.74 0.431787
Target:  5'- cCCGCGG-CGCGCugccgcuCGGCGUacGCGACGa -3'
miRNA:   3'- -GGCGCUaGCGUGu------GCCGUA--UGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 19386 0.74 0.451301
Target:  5'- gCCGCGGUCaGCgACACGaCcgACGGCGGc -3'
miRNA:   3'- -GGCGCUAG-CG-UGUGCcGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 19499 0.73 0.512542
Target:  5'- aUCGCGucGUCGCGauuCGGCGUGCGGCu- -3'
miRNA:   3'- -GGCGC--UAGCGUgu-GCCGUAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 40452 0.72 0.544431
Target:  5'- gUCGCGA-CGCACAUGGCGguucacgagAUAGcCGGa -3'
miRNA:   3'- -GGCGCUaGCGUGUGCCGUa--------UGUU-GCC- -5'
12157 5' -52.5 NC_003309.1 + 28485 0.72 0.576936
Target:  5'- cCCGCGcgC-CACGcCGGCccGUAUAGCGGc -3'
miRNA:   3'- -GGCGCuaGcGUGU-GCCG--UAUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 45754 0.72 0.587874
Target:  5'- gCGCcuGAUguaCGCGC-CGGuCGUACAGCGGg -3'
miRNA:   3'- gGCG--CUA---GCGUGuGCC-GUAUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 12068 0.71 0.609852
Target:  5'- aCGCGGgcCGC-CGCGGCGUugGugGa -3'
miRNA:   3'- gGCGCUa-GCGuGUGCCGUAugUugCc -5'
12157 5' -52.5 NC_003309.1 + 34433 0.71 0.620874
Target:  5'- aCCGUGGagaGCGCgAUGGCGUAguACGGc -3'
miRNA:   3'- -GGCGCUag-CGUG-UGCCGUAUguUGCC- -5'
12157 5' -52.5 NC_003309.1 + 9453 0.71 0.620874
Target:  5'- cCCGCcGUCGCGCACcGCAUugAaauACGa -3'
miRNA:   3'- -GGCGcUAGCGUGUGcCGUAugU---UGCc -5'
12157 5' -52.5 NC_003309.1 + 11975 0.71 0.620874
Target:  5'- gCCGCGG-CGCGCGCcGCGU-CGGCGu -3'
miRNA:   3'- -GGCGCUaGCGUGUGcCGUAuGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 49002 0.71 0.628596
Target:  5'- cCCGUGG-CGCgauugguucgagugGCACGGC--ACAACGGu -3'
miRNA:   3'- -GGCGCUaGCG--------------UGUGCCGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 16929 0.7 0.653962
Target:  5'- gUCGCGAUCGCGC-CGaCA-GCGACGa -3'
miRNA:   3'- -GGCGCUAGCGUGuGCcGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 43968 0.7 0.664964
Target:  5'- -aGCGGUCGCGCAC-GCucucggGCAuCGGg -3'
miRNA:   3'- ggCGCUAGCGUGUGcCGua----UGUuGCC- -5'
12157 5' -52.5 NC_003309.1 + 10491 0.7 0.675936
Target:  5'- aUCGCGAggcuuUCGCGCaucGCGcGCAUGCcGCGa -3'
miRNA:   3'- -GGCGCU-----AGCGUG---UGC-CGUAUGuUGCc -5'
12157 5' -52.5 NC_003309.1 + 10638 0.7 0.694486
Target:  5'- cCCGCGAU-GCGCGCGccgauuuccugacuGCcgGCAACGu -3'
miRNA:   3'- -GGCGCUAgCGUGUGC--------------CGuaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 8556 0.7 0.697744
Target:  5'- uCUGCGAUCGgggaguUACGCcGCcgGCGGCGGc -3'
miRNA:   3'- -GGCGCUAGC------GUGUGcCGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 1221 0.69 0.729946
Target:  5'- uCCaCGAUCGCACACGacg-GCGACGc -3'
miRNA:   3'- -GGcGCUAGCGUGUGCcguaUGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.