miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12162 5' -54.7 NC_003309.1 + 53057 0.68 0.572306
Target:  5'- cUCGcGCAugacgauUGCCGCGCACCGC-GUcggacUUCCa -3'
miRNA:   3'- -AGU-CGU-------ACGGUGUGUGGCGuCA-----AGGG- -5'
12162 5' -54.7 NC_003309.1 + 49097 0.66 0.706275
Target:  5'- uUCGGCGUGCCG---ACC-CGGUUCUg -3'
miRNA:   3'- -AGUCGUACGGUgugUGGcGUCAAGGg -5'
12162 5' -54.7 NC_003309.1 + 47380 0.66 0.706275
Target:  5'- -gGGCA-GCUcgAUugAUCGCAGUUCgCCa -3'
miRNA:   3'- agUCGUaCGG--UGugUGGCGUCAAG-GG- -5'
12162 5' -54.7 NC_003309.1 + 44717 0.67 0.651117
Target:  5'- cCGGUAUccGCCAuCACAgcCCGCAcGUUCuCCg -3'
miRNA:   3'- aGUCGUA--CGGU-GUGU--GGCGU-CAAG-GG- -5'
12162 5' -54.7 NC_003309.1 + 44573 0.66 0.71713
Target:  5'- cCGGC-UGCCGCagacgaucGCGCUGCAGcggCUCa -3'
miRNA:   3'- aGUCGuACGGUG--------UGUGGCGUCaa-GGG- -5'
12162 5' -54.7 NC_003309.1 + 43659 0.72 0.380771
Target:  5'- cCAGCGUGUugaugaacuCGCGCAgCGuCGGUUCCUg -3'
miRNA:   3'- aGUCGUACG---------GUGUGUgGC-GUCAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 43453 0.71 0.427423
Target:  5'- cUCAGcCAUGCCGCGCAgCCGCg---CCg -3'
miRNA:   3'- -AGUC-GUACGGUGUGU-GGCGucaaGGg -5'
12162 5' -54.7 NC_003309.1 + 43235 0.66 0.695346
Target:  5'- --cGCGUaaCCACGCGCCGCug--CCCa -3'
miRNA:   3'- aguCGUAc-GGUGUGUGGCGucaaGGG- -5'
12162 5' -54.7 NC_003309.1 + 41693 0.72 0.371857
Target:  5'- -aAGCcgGCCGCGCuCCGCgucgagguaGGUUCUCa -3'
miRNA:   3'- agUCGuaCGGUGUGuGGCG---------UCAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 38116 0.66 0.73857
Target:  5'- gCGGCAauUGCUcCGCG-CGCAGUUCUUu -3'
miRNA:   3'- aGUCGU--ACGGuGUGUgGCGUCAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 37985 1.11 0.000693
Target:  5'- cUCAGCAUGCCACACACCGCAGUUCCCc -3'
miRNA:   3'- -AGUCGUACGGUGUGUGGCGUCAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 32510 0.68 0.606596
Target:  5'- aUCAGCAgagcUGCCgACACGCUGgAaUUCCa -3'
miRNA:   3'- -AGUCGU----ACGG-UGUGUGGCgUcAAGGg -5'
12162 5' -54.7 NC_003309.1 + 31211 0.72 0.380771
Target:  5'- --cGCAUGCUugACgGCCGCAGgcacgacgaaUUCCCc -3'
miRNA:   3'- aguCGUACGGugUG-UGGCGUC----------AAGGG- -5'
12162 5' -54.7 NC_003309.1 + 27126 0.66 0.706275
Target:  5'- ---cCAUGCuuuccgcucgCACGCGCCGCAGUgCCUu -3'
miRNA:   3'- agucGUACG----------GUGUGUGGCGUCAaGGG- -5'
12162 5' -54.7 NC_003309.1 + 23356 0.68 0.595498
Target:  5'- gCAGCAgguucagGCCcgGCACCGUAGUcgUCgCCg -3'
miRNA:   3'- aGUCGUa------CGGugUGUGGCGUCA--AG-GG- -5'
12162 5' -54.7 NC_003309.1 + 23264 0.74 0.298186
Target:  5'- -aAGCGUGCCGCACGCUGgAugucggugaggGUUUCCg -3'
miRNA:   3'- agUCGUACGGUGUGUGGCgU-----------CAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 22850 0.69 0.539575
Target:  5'- cCGGCAUGaguguucCCGCACGCaCGcCGGUcgCCCu -3'
miRNA:   3'- aGUCGUAC-------GGUGUGUG-GC-GUCAa-GGG- -5'
12162 5' -54.7 NC_003309.1 + 22398 0.69 0.562429
Target:  5'- uUCGGCAUGCCGCugcgcgucgaACGcCCGCGcggCCUg -3'
miRNA:   3'- -AGUCGUACGGUG----------UGU-GGCGUcaaGGG- -5'
12162 5' -54.7 NC_003309.1 + 20530 0.74 0.298186
Target:  5'- -gAGCAUGagGCGCGCCGCuccgUCCCa -3'
miRNA:   3'- agUCGUACggUGUGUGGCGuca-AGGG- -5'
12162 5' -54.7 NC_003309.1 + 17577 0.68 0.628851
Target:  5'- cCGGCAcGCCgaagcgcacACGCACCGCGGUcagUUgCg -3'
miRNA:   3'- aGUCGUaCGG---------UGUGUGGCGUCA---AGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.