miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12162 5' -54.7 NC_003309.1 + 15655 0.7 0.467084
Target:  5'- cCGGCAUaGCCGCACucaggACCGCGGUa--- -3'
miRNA:   3'- aGUCGUA-CGGUGUG-----UGGCGUCAaggg -5'
12162 5' -54.7 NC_003309.1 + 13462 0.67 0.672204
Target:  5'- -gGGCuuUGCCACACgcagcgucguaucGCCGCcGUgCCCu -3'
miRNA:   3'- agUCGu-ACGGUGUG-------------UGGCGuCAaGGG- -5'
12162 5' -54.7 NC_003309.1 + 12554 0.68 0.628851
Target:  5'- -aAGCGUGCCguccuuucGCGCGCCcuucguCAGUucgUCCCg -3'
miRNA:   3'- agUCGUACGG--------UGUGUGGc-----GUCA---AGGG- -5'
12162 5' -54.7 NC_003309.1 + 11578 0.82 0.086679
Target:  5'- aCAGCA-GCCGCACGCCGuCGGcagcgUCCCg -3'
miRNA:   3'- aGUCGUaCGGUGUGUGGC-GUCa----AGGG- -5'
12162 5' -54.7 NC_003309.1 + 10905 0.7 0.477294
Target:  5'- uUCAGCcccGCCGCGgucgcgguCGCCGCGcGUUCCg -3'
miRNA:   3'- -AGUCGua-CGGUGU--------GUGGCGU-CAAGGg -5'
12162 5' -54.7 NC_003309.1 + 10646 0.72 0.389826
Target:  5'- aCGGCAUGCCcgcgaugcGCGCGCCGau-UUCCUg -3'
miRNA:   3'- aGUCGUACGG--------UGUGUGGCgucAAGGG- -5'
12162 5' -54.7 NC_003309.1 + 10480 0.66 0.71713
Target:  5'- uUCGcGCAUcGCgCGCAUGCCGCgAGUUCggCCu -3'
miRNA:   3'- -AGU-CGUA-CG-GUGUGUGGCG-UCAAG--GG- -5'
12162 5' -54.7 NC_003309.1 + 6515 0.66 0.695346
Target:  5'- cUCGGCcgcuUGCCGCGCGCC-CGGgaUCa -3'
miRNA:   3'- -AGUCGu---ACGGUGUGUGGcGUCaaGGg -5'
12162 5' -54.7 NC_003309.1 + 6383 0.68 0.592174
Target:  5'- aCAGCA-GCCAUACcgcguuaccccuucGCCGCGGUgggCUUg -3'
miRNA:   3'- aGUCGUaCGGUGUG--------------UGGCGUCAa--GGG- -5'
12162 5' -54.7 NC_003309.1 + 5838 0.67 0.639987
Target:  5'- uUCAGCAUGCCGUugG-CG-AGUUCCg -3'
miRNA:   3'- -AGUCGUACGGUGugUgGCgUCAAGGg -5'
12162 5' -54.7 NC_003309.1 + 3938 0.66 0.706275
Target:  5'- gCGGCA-GCCaucuGCGCGCCGCuGUcgaauUCgCCg -3'
miRNA:   3'- aGUCGUaCGG----UGUGUGGCGuCA-----AG-GG- -5'
12162 5' -54.7 NC_003309.1 + 497 0.67 0.684354
Target:  5'- cCAGCAUugcgccgaagccGCCAUuuGCGCCGCcGcUUCCUu -3'
miRNA:   3'- aGUCGUA------------CGGUG--UGUGGCGuC-AAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.