miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12176 3' -51.5 NC_003309.1 + 11126 0.7 0.685607
Target:  5'- -cGAGCGGugccugcauGUCGAucaaGCuCGACGUCGCa -3'
miRNA:   3'- uuCUUGCC---------UAGCU----UGuGCUGCAGCGg -5'
12176 3' -51.5 NC_003309.1 + 42373 0.7 0.685607
Target:  5'- --aAGCGGcGUCGAgaucACGCGAaucuaGUCGCCa -3'
miRNA:   3'- uucUUGCC-UAGCU----UGUGCUg----CAGCGG- -5'
12176 3' -51.5 NC_003309.1 + 45572 0.71 0.674481
Target:  5'- ---uGCGGA-CGAGCAUGcCGUCGCa -3'
miRNA:   3'- uucuUGCCUaGCUUGUGCuGCAGCGg -5'
12176 3' -51.5 NC_003309.1 + 44464 1.09 0.002506
Target:  5'- gAAGAACGGAUCGAACACGACGUCGCCc -3'
miRNA:   3'- -UUCUUGCCUAGCUUGUGCUGCAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.