Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 46161 | 1.12 | 0.000344 |
Target: 5'- aGCGUCACGCACCGCCAUGCAGCAGUCg -3' miRNA: 3'- -CGCAGUGCGUGGCGGUACGUCGUCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 5568 | 0.68 | 0.442714 |
Target: 5'- uUGUCuuCGCGCgCGCCGaucGCGGCGGUg -3' miRNA: 3'- cGCAGu-GCGUG-GCGGUa--CGUCGUCAg -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 9514 | 0.69 | 0.423497 |
Target: 5'- aGCG-CGCGCACCGUgAccugcacgcuUGCGGCGuUCg -3' miRNA: 3'- -CGCaGUGCGUGGCGgU----------ACGUCGUcAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 19497 | 0.69 | 0.414078 |
Target: 5'- cGCGUCGuCGCGauUCGgCGUGCGGCuGUa -3' miRNA: 3'- -CGCAGU-GCGU--GGCgGUACGUCGuCAg -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 5150 | 0.69 | 0.414078 |
Target: 5'- cGCGUCgccGCGCGCCGCCGcgaGC-GCAcGUa -3' miRNA: 3'- -CGCAG---UGCGUGGCGGUa--CGuCGU-CAg -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 22583 | 0.69 | 0.404789 |
Target: 5'- aGCGaCGCGCAgCCGCUcaGUGcCAGCGG-Ca -3' miRNA: 3'- -CGCaGUGCGU-GGCGG--UAC-GUCGUCaG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 16276 | 0.69 | 0.395632 |
Target: 5'- -aGUCGCGCACgaUCGcGUAGCAGUCg -3' miRNA: 3'- cgCAGUGCGUGgcGGUaCGUCGUCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 19774 | 0.69 | 0.38661 |
Target: 5'- uCGUCGCGuCGCCgGCCAU-CGGCGGg- -3' miRNA: 3'- cGCAGUGC-GUGG-CGGUAcGUCGUCag -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 51056 | 0.7 | 0.360371 |
Target: 5'- gGCGUCaACGC-CCGCCAgaUGCcuGCGGa- -3' miRNA: 3'- -CGCAG-UGCGuGGCGGU--ACGu-CGUCag -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 22321 | 0.68 | 0.442714 |
Target: 5'- cGCaa-GCGCcgGCCGCCAUGCcaAGCAG-Cg -3' miRNA: 3'- -CGcagUGCG--UGGCGGUACG--UCGUCaG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 11448 | 0.68 | 0.472435 |
Target: 5'- uCGUCGC-CGCCGUCuguUGCggacacgaAGCGGUCa -3' miRNA: 3'- cGCAGUGcGUGGCGGu--ACG--------UCGUCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 13446 | 0.67 | 0.492798 |
Target: 5'- aGCGUCGuauCGCCGCCGUGCccuuGUAccGUCg -3' miRNA: 3'- -CGCAGUgc-GUGGCGGUACGu---CGU--CAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 14819 | 0.66 | 0.588603 |
Target: 5'- aCGUCACGCcCCGCUuaccGC-GCAGcCg -3' miRNA: 3'- cGCAGUGCGuGGCGGua--CGuCGUCaG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 4146 | 0.66 | 0.577709 |
Target: 5'- -gGUCGCGCucCCGCCGuUGCuGUcgauGUCg -3' miRNA: 3'- cgCAGUGCGu-GGCGGU-ACGuCGu---CAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 48749 | 0.66 | 0.56686 |
Target: 5'- cGCcUCAUGCaACCGUCAUGCAagaGCgaaucaucaGGUCg -3' miRNA: 3'- -CGcAGUGCG-UGGCGGUACGU---CG---------UCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 53262 | 0.66 | 0.56686 |
Target: 5'- cGC-UCGCGCGCCGUCuucgccGCGuGaCAGUCa -3' miRNA: 3'- -CGcAGUGCGUGGCGGua----CGU-C-GUCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 7808 | 0.66 | 0.556064 |
Target: 5'- aGCGcCAUGUcgaGCgCGCCAUGUAcGCGcGUCa -3' miRNA: 3'- -CGCaGUGCG---UG-GCGGUACGU-CGU-CAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 46837 | 0.67 | 0.53466 |
Target: 5'- aCGgcaACGCGCCGUCA-GCGuCAGUCu -3' miRNA: 3'- cGCag-UGCGUGGCGGUaCGUcGUCAG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 10424 | 0.67 | 0.524067 |
Target: 5'- cGCGUUuuGCAgcuUCGCCGcaGCAGCAGcUCg -3' miRNA: 3'- -CGCAGugCGU---GGCGGUa-CGUCGUC-AG- -5' |
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12179 | 3' | -57.1 | NC_003309.1 | + | 9698 | 0.67 | 0.513554 |
Target: 5'- uGUGUCGCGCGCgaUGC---GCAGCAcGUCg -3' miRNA: 3'- -CGCAGUGCGUG--GCGguaCGUCGU-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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