Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 4146 | 0.66 | 0.577709 |
Target: 5'- -gGUCGCGCucCCGCCGuUGCuGUcgauGUCg -3' miRNA: 3'- cgCAGUGCGu-GGCGGU-ACGuCGu---CAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 5150 | 0.69 | 0.414078 |
Target: 5'- cGCGUCgccGCGCGCCGCCGcgaGC-GCAcGUa -3' miRNA: 3'- -CGCAG---UGCGUGGCGGUa--CGuCGU-CAg -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 5323 | 0.66 | 0.606104 |
Target: 5'- aGCGUgCGCGCGCCGagcuugcgaacgaCGgacuucggacGCAGCAGUUc -3' miRNA: 3'- -CGCA-GUGCGUGGCg------------GUa---------CGUCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 5568 | 0.68 | 0.442714 |
Target: 5'- uUGUCuuCGCGCgCGCCGaucGCGGCGGUg -3' miRNA: 3'- cGCAGu-GCGUG-GCGGUa--CGUCGUCAg -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 6036 | 0.71 | 0.2886 |
Target: 5'- aGCGUCuggucgcgcuggaAUGCACUGaCCAUGUGGCcGUCg -3' miRNA: 3'- -CGCAG-------------UGCGUGGC-GGUACGUCGuCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 7808 | 0.66 | 0.556064 |
Target: 5'- aGCGcCAUGUcgaGCgCGCCAUGUAcGCGcGUCa -3' miRNA: 3'- -CGCaGUGCG---UG-GCGGUACGU-CGU-CAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 9418 | 0.77 | 0.11637 |
Target: 5'- cCGUCgACGagagACCGCgCAUGCGGCGGUCg -3' miRNA: 3'- cGCAG-UGCg---UGGCG-GUACGUCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 9514 | 0.69 | 0.423497 |
Target: 5'- aGCG-CGCGCACCGUgAccugcacgcuUGCGGCGuUCg -3' miRNA: 3'- -CGCaGUGCGUGGCGgU----------ACGUCGUcAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 9698 | 0.67 | 0.513554 |
Target: 5'- uGUGUCGCGCGCgaUGC---GCAGCAcGUCg -3' miRNA: 3'- -CGCAGUGCGUG--GCGguaCGUCGU-CAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 10424 | 0.67 | 0.524067 |
Target: 5'- cGCGUUuuGCAgcuUCGCCGcaGCAGCAGcUCg -3' miRNA: 3'- -CGCAGugCGU---GGCGGUa-CGUCGUC-AG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 11448 | 0.68 | 0.472435 |
Target: 5'- uCGUCGC-CGCCGUCuguUGCggacacgaAGCGGUCa -3' miRNA: 3'- cGCAGUGcGUGGCGGu--ACG--------UCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 11769 | 0.71 | 0.317126 |
Target: 5'- cGCGUCgGCGCGCCcggcgaucagccccGCCAUGCGgaccuGCGcGUCg -3' miRNA: 3'- -CGCAG-UGCGUGG--------------CGGUACGU-----CGU-CAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 13446 | 0.67 | 0.492798 |
Target: 5'- aGCGUCGuauCGCCGCCGUGCccuuGUAccGUCg -3' miRNA: 3'- -CGCAGUgc-GUGGCGGUACGu---CGU--CAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 14819 | 0.66 | 0.588603 |
Target: 5'- aCGUCACGCcCCGCUuaccGC-GCAGcCg -3' miRNA: 3'- cGCAGUGCGuGGCGGua--CGuCGUCaG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 16276 | 0.69 | 0.395632 |
Target: 5'- -aGUCGCGCACgaUCGcGUAGCAGUCg -3' miRNA: 3'- cgCAGUGCGUGgcGGUaCGUCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 16581 | 0.83 | 0.045123 |
Target: 5'- aGCG-CA-GUACCGUCGUGCAGCAGUCg -3' miRNA: 3'- -CGCaGUgCGUGGCGGUACGUCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 16704 | 0.75 | 0.176045 |
Target: 5'- aGCG-CGCGCACCGCCuuc--GCGGUCg -3' miRNA: 3'- -CGCaGUGCGUGGCGGuacguCGUCAG- -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 19497 | 0.69 | 0.414078 |
Target: 5'- cGCGUCGuCGCGauUCGgCGUGCGGCuGUa -3' miRNA: 3'- -CGCAGU-GCGU--GGCgGUACGUCGuCAg -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 19774 | 0.69 | 0.38661 |
Target: 5'- uCGUCGCGuCGCCgGCCAU-CGGCGGg- -3' miRNA: 3'- cGCAGUGC-GUGG-CGGUAcGUCGUCag -5' |
|||||||
12179 | 3' | -57.1 | NC_003309.1 | + | 22321 | 0.68 | 0.442714 |
Target: 5'- cGCaa-GCGCcgGCCGCCAUGCcaAGCAG-Cg -3' miRNA: 3'- -CGcagUGCG--UGGCGGUACG--UCGUCaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home