Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 34211 | 0.7 | 0.349393 |
|
Target: 5'- cCGUCGgGCuaccgaCGCCAUGCAGCAcaacuucgcgauccGUCg -3' miRNA: 3'- cGCAGUgCGug----GCGGUACGUCGU--------------CAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 22615 | 0.71 | 0.319467 |
|
Target: 5'- cCGUCGC-CACCggcuGCCGUGCAGU-GUCg -3' miRNA: 3'- cGCAGUGcGUGG----CGGUACGUCGuCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 11769 | 0.71 | 0.317126 |
|
Target: 5'- cGCGUCgGCGCGCCcggcgaucagccccGCCAUGCGgaccuGCGcGUCg -3' miRNA: 3'- -CGCAG-UGCGUGG--------------CGGUACGU-----CGU-CAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 43536 | 0.71 | 0.307134 |
|
Target: 5'- cGCG-CACGCcgucgGCgGCCAUcgcgcgcaucaggucGCGGCAGUCu -3' miRNA: 3'- -CGCaGUGCG-----UGgCGGUA---------------CGUCGUCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 6036 | 0.71 | 0.2886 |
|
Target: 5'- aGCGUCuggucgcgcuggaAUGCACUGaCCAUGUGGCcGUCg -3' miRNA: 3'- -CGCAG-------------UGCGUGGC-GGUACGUCGuCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 16704 | 0.75 | 0.176045 |
|
Target: 5'- aGCG-CGCGCACCGCCuuc--GCGGUCg -3' miRNA: 3'- -CGCaGUGCGUGGCGGuacguCGUCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 9418 | 0.77 | 0.11637 |
|
Target: 5'- cCGUCgACGagagACCGCgCAUGCGGCGGUCg -3' miRNA: 3'- cGCAG-UGCg---UGGCG-GUACGUCGUCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 16581 | 0.83 | 0.045123 |
|
Target: 5'- aGCG-CA-GUACCGUCGUGCAGCAGUCg -3' miRNA: 3'- -CGCaGUgCGUGGCGGUACGUCGUCAG- -5' |
|||||||
| 12179 | 3' | -57.1 | NC_003309.1 | + | 46161 | 1.12 | 0.000344 |
|
Target: 5'- aGCGUCACGCACCGCCAUGCAGCAGUCg -3' miRNA: 3'- -CGCAGUGCGUGGCGGUACGUCGUCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home