miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12184 5' -57 NC_003309.1 + 37835 0.66 0.633531
Target:  5'- -gGCCGUGCUGuuucucgugcuGCUGUCGaUCGUcACCCc -3'
miRNA:   3'- caCGGCACGGU-----------UGGUAGC-GGCA-UGGG- -5'
12184 5' -57 NC_003309.1 + 43530 0.66 0.622638
Target:  5'- -cGCCGUcGgCGGCCAUCGCgCGcAUCa -3'
miRNA:   3'- caCGGCA-CgGUUGGUAGCG-GCaUGGg -5'
12184 5' -57 NC_003309.1 + 38979 0.66 0.621549
Target:  5'- -aGCCGgcaGCCGauacguccaucgaACCuuUCGCCGcgucgACCCa -3'
miRNA:   3'- caCGGCa--CGGU-------------UGGu-AGCGGCa----UGGG- -5'
12184 5' -57 NC_003309.1 + 46312 0.66 0.619371
Target:  5'- -cGCCGaGCaCGGCCuucugcgcacgcgagCGCgCGUGCCCu -3'
miRNA:   3'- caCGGCaCG-GUUGGua-------------GCG-GCAUGGG- -5'
12184 5' -57 NC_003309.1 + 27738 0.66 0.611752
Target:  5'- -cGCCGc-CCGGCgCAUCGCCGaaaucaguCCCg -3'
miRNA:   3'- caCGGCacGGUUG-GUAGCGGCau------GGG- -5'
12184 5' -57 NC_003309.1 + 18517 0.66 0.590042
Target:  5'- -cGCCGUGaCCu-CCGUCuugaugacGCCGUAUCg -3'
miRNA:   3'- caCGGCAC-GGuuGGUAG--------CGGCAUGGg -5'
12184 5' -57 NC_003309.1 + 19035 0.66 0.58896
Target:  5'- -gGCCGuUGCUGgaucugcgcGCCGUCGUCGaucgccgcauacuUGCCCg -3'
miRNA:   3'- caCGGC-ACGGU---------UGGUAGCGGC-------------AUGGG- -5'
12184 5' -57 NC_003309.1 + 10625 0.67 0.579235
Target:  5'- -cGCCGauuuccugacUGCCGGCaacguUCGCgCGUGCCg -3'
miRNA:   3'- caCGGC----------ACGGUUGgu---AGCG-GCAUGGg -5'
12184 5' -57 NC_003309.1 + 22617 0.67 0.568471
Target:  5'- -cGCCGUcGCC-ACCGgcuGCCGUGCa- -3'
miRNA:   3'- caCGGCA-CGGuUGGUag-CGGCAUGgg -5'
12184 5' -57 NC_003309.1 + 46967 0.67 0.568471
Target:  5'- -aGauGUGCguGCCGUCGUCGUGCg- -3'
miRNA:   3'- caCggCACGguUGGUAGCGGCAUGgg -5'
12184 5' -57 NC_003309.1 + 13051 0.67 0.567397
Target:  5'- -aGCUGcGCCGggauACUGUCGCucguggaCGUGCCCg -3'
miRNA:   3'- caCGGCaCGGU----UGGUAGCG-------GCAUGGG- -5'
12184 5' -57 NC_003309.1 + 31676 0.67 0.562036
Target:  5'- -gGCCGagGCCGACCgcGacauuccgaagcugcUCGCaGUGCCCg -3'
miRNA:   3'- caCGGCa-CGGUUGG--U---------------AGCGgCAUGGG- -5'
12184 5' -57 NC_003309.1 + 11549 0.67 0.536512
Target:  5'- cGUGCg--GCCAcguUCAUCGCCGUgagugcuugcgcGCCCu -3'
miRNA:   3'- -CACGgcaCGGUu--GGUAGCGGCA------------UGGG- -5'
12184 5' -57 NC_003309.1 + 8879 0.67 0.536512
Target:  5'- -aGCCGccGCCAGCCGUcCGgCGUuucACCg -3'
miRNA:   3'- caCGGCa-CGGUUGGUA-GCgGCA---UGGg -5'
12184 5' -57 NC_003309.1 + 9185 0.68 0.505201
Target:  5'- -cGCCGccGCCGcgAUCAUCGCCGcaugcagAUCCg -3'
miRNA:   3'- caCGGCa-CGGU--UGGUAGCGGCa------UGGG- -5'
12184 5' -57 NC_003309.1 + 31513 0.68 0.505201
Target:  5'- -cGCCG-GCCAGCCGaCGgCG-GCCUa -3'
miRNA:   3'- caCGGCaCGGUUGGUaGCgGCaUGGG- -5'
12184 5' -57 NC_003309.1 + 23548 0.68 0.500057
Target:  5'- -aGCCGcucgGCCAucuucucguacuCCGUgaaagggaaugcgaCGCCGUACCCu -3'
miRNA:   3'- caCGGCa---CGGUu-----------GGUA--------------GCGGCAUGGG- -5'
12184 5' -57 NC_003309.1 + 10321 0.68 0.46474
Target:  5'- -cGCCGggcGCCGACCcaCGCUGUcgccGCCUg -3'
miRNA:   3'- caCGGCa--CGGUUGGuaGCGGCA----UGGG- -5'
12184 5' -57 NC_003309.1 + 4922 0.7 0.407411
Target:  5'- -gGCCuGuUGCuCGACCGacagCGCCGUACCg -3'
miRNA:   3'- caCGG-C-ACG-GUUGGUa---GCGGCAUGGg -5'
12184 5' -57 NC_003309.1 + 13471 0.7 0.388416
Target:  5'- -cGCCGaauugggcuuUGCCAcacgcagcgucguAUCGcCGCCGUGCCCu -3'
miRNA:   3'- caCGGC----------ACGGU-------------UGGUaGCGGCAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.