miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12184 5' -57 NC_003309.1 + 11053 0.7 0.371739
Target:  5'- -gGCCGcGCCGAgUG-CGaCCGUGCCCa -3'
miRNA:   3'- caCGGCaCGGUUgGUaGC-GGCAUGGG- -5'
12184 5' -57 NC_003309.1 + 14457 0.7 0.36316
Target:  5'- uUGCCGUgugccagagauaGCCGagguauuuGCCGUCGaCCGUcGCCCc -3'
miRNA:   3'- cACGGCA------------CGGU--------UGGUAGC-GGCA-UGGG- -5'
12184 5' -57 NC_003309.1 + 10933 0.71 0.330235
Target:  5'- -cGCCGUcGCCGcGCUuucaGUCGCCGUcuucaGCCCc -3'
miRNA:   3'- caCGGCA-CGGU-UGG----UAGCGGCA-----UGGG- -5'
12184 5' -57 NC_003309.1 + 17257 0.72 0.299563
Target:  5'- -cGCUGcUGCCAccACCAcCGCCGccGCCCu -3'
miRNA:   3'- caCGGC-ACGGU--UGGUaGCGGCa-UGGG- -5'
12184 5' -57 NC_003309.1 + 32203 0.72 0.299563
Target:  5'- -aGCgaGUGCCGAUCAggUCGCCGacgccGCCCg -3'
miRNA:   3'- caCGg-CACGGUUGGU--AGCGGCa----UGGG- -5'
12184 5' -57 NC_003309.1 + 17056 0.72 0.278038
Target:  5'- cGUGCCGuUGUUGGCCGUCcCCGcgaGCCCg -3'
miRNA:   3'- -CACGGC-ACGGUUGGUAGcGGCa--UGGG- -5'
12184 5' -57 NC_003309.1 + 3103 0.72 0.268422
Target:  5'- aGUGCCGUGCCGuucaugaacgacuuGCCGgcguacugcuggaUCGCCugcgcaUGCCCg -3'
miRNA:   3'- -CACGGCACGGU--------------UGGU-------------AGCGGc-----AUGGG- -5'
12184 5' -57 NC_003309.1 + 7487 0.73 0.238714
Target:  5'- --cCCGUacGCCGGCCGUCGCCa-ACCCg -3'
miRNA:   3'- cacGGCA--CGGUUGGUAGCGGcaUGGG- -5'
12184 5' -57 NC_003309.1 + 10985 0.73 0.238714
Target:  5'- -aGCCGgaGCCGACCGagCGCaucauCGUGCCCg -3'
miRNA:   3'- caCGGCa-CGGUUGGUa-GCG-----GCAUGGG- -5'
12184 5' -57 NC_003309.1 + 11493 0.76 0.160475
Target:  5'- -cGCCGUGUCGAUCG-CGCCGgcgGCUCg -3'
miRNA:   3'- caCGGCACGGUUGGUaGCGGCa--UGGG- -5'
12184 5' -57 NC_003309.1 + 29514 0.76 0.151987
Target:  5'- -gGCCGU-CCGACCAUCGgCGauaUGCCCg -3'
miRNA:   3'- caCGGCAcGGUUGGUAGCgGC---AUGGG- -5'
12184 5' -57 NC_003309.1 + 43317 0.77 0.136225
Target:  5'- -gGCCGUGCguCGACCA-CGCCuUGCCCa -3'
miRNA:   3'- caCGGCACG--GUUGGUaGCGGcAUGGG- -5'
12184 5' -57 NC_003309.1 + 52293 0.8 0.092208
Target:  5'- cGUGCUGUcuaagaucGCCAGCgCAcUUGCCGUGCCCg -3'
miRNA:   3'- -CACGGCA--------CGGUUG-GU-AGCGGCAUGGG- -5'
12184 5' -57 NC_003309.1 + 47908 1.11 0.000441
Target:  5'- cGUGCCGUGCCAACCAUCGCCGUACCCu -3'
miRNA:   3'- -CACGGCACGGUUGGUAGCGGCAUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.