miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12194 3' -54.7 NC_003309.1 + 52943 0.66 0.752696
Target:  5'- uGCACGGCuuCAuCGGGC--GUCGUGCCa -3'
miRNA:   3'- -CGUGCCGc-GUuGCUUGgaCAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 52077 0.7 0.515468
Target:  5'- cGCACGGCGaacCGGCgGAGCUUcUCGCAUg -3'
miRNA:   3'- -CGUGCCGC---GUUG-CUUGGAcAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 47969 0.68 0.663978
Target:  5'- cGUGCGGCGCGccagcucgcgcucgGCGAAgCUG-CG-ACCg -3'
miRNA:   3'- -CGUGCCGCGU--------------UGCUUgGACaGCgUGG- -5'
12194 3' -54.7 NC_003309.1 + 47491 0.79 0.150348
Target:  5'- -gGCGGCGCAGCGAcACCU-UCGcCGCCg -3'
miRNA:   3'- cgUGCCGCGUUGCU-UGGAcAGC-GUGG- -5'
12194 3' -54.7 NC_003309.1 + 47003 0.68 0.634374
Target:  5'- gGCGCGucuuCGCAGCcAACUUGUCGaCGCUc -3'
miRNA:   3'- -CGUGCc---GCGUUGcUUGGACAGC-GUGG- -5'
12194 3' -54.7 NC_003309.1 + 43088 0.7 0.515468
Target:  5'- aCGCGGCGCgAGCGAcucaCUGcCGC-CCg -3'
miRNA:   3'- cGUGCCGCG-UUGCUug--GACaGCGuGG- -5'
12194 3' -54.7 NC_003309.1 + 39962 0.78 0.172337
Target:  5'- uCGCGGCGCGcuuguCGAgcACCUGUUGCGCg -3'
miRNA:   3'- cGUGCCGCGUu----GCU--UGGACAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 37926 0.67 0.699845
Target:  5'- aGCGCGGCcuuuCGGCGGggcgGCCcGUaugCGCGCCc -3'
miRNA:   3'- -CGUGCCGc---GUUGCU----UGGaCA---GCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 33997 0.68 0.656315
Target:  5'- uGCGUGGCGCAguucGCGGuaaGCgUGuUCGCACg -3'
miRNA:   3'- -CGUGCCGCGU----UGCU---UGgAC-AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 32958 0.72 0.406547
Target:  5'- gGCGCGagaGCGCGACGAcCCUGagcugaUCGCGgCa -3'
miRNA:   3'- -CGUGC---CGCGUUGCUuGGAC------AGCGUgG- -5'
12194 3' -54.7 NC_003309.1 + 31701 0.67 0.699845
Target:  5'- gGCuCGGCGCGACGAucgugaaucagGCCgagGcCG-ACCg -3'
miRNA:   3'- -CGuGCCGCGUUGCU-----------UGGa--CaGCgUGG- -5'
12194 3' -54.7 NC_003309.1 + 30893 0.7 0.515468
Target:  5'- gGCuCGGCGUAcaacgugcgauCGAACCUaGUCGCAauCCg -3'
miRNA:   3'- -CGuGCCGCGUu----------GCUUGGA-CAGCGU--GG- -5'
12194 3' -54.7 NC_003309.1 + 30269 0.7 0.505034
Target:  5'- aGCACGGCGCcugguauuggAGCGAGCCa---GUAUCg -3'
miRNA:   3'- -CGUGCCGCG----------UUGCUUGGacagCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 30146 0.66 0.731842
Target:  5'- cGgACGGCGCAGgGGAUaUG-CGC-CCa -3'
miRNA:   3'- -CgUGCCGCGUUgCUUGgACaGCGuGG- -5'
12194 3' -54.7 NC_003309.1 + 29437 0.66 0.731842
Target:  5'- gGCAUGGaaaGCGgcccaaagcGCGccAACCUGUUGCAUUu -3'
miRNA:   3'- -CGUGCCg--CGU---------UGC--UUGGACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 28840 0.71 0.484447
Target:  5'- uCACGGUGCuGGCGcugcAACCaUGUCGC-CCg -3'
miRNA:   3'- cGUGCCGCG-UUGC----UUGG-ACAGCGuGG- -5'
12194 3' -54.7 NC_003309.1 + 28509 0.68 0.623395
Target:  5'- cGCGCcggaaucaGGCaGCGGCGAcCCg--CGCGCCa -3'
miRNA:   3'- -CGUG--------CCG-CGUUGCUuGGacaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27926 0.66 0.762945
Target:  5'- gGCAC-GCGCAAUuGAUCcGUCGUugCu -3'
miRNA:   3'- -CGUGcCGCGUUGcUUGGaCAGCGugG- -5'
12194 3' -54.7 NC_003309.1 + 27477 0.69 0.579649
Target:  5'- aGCGCGGCGaagaGGCGu-UCUaUCGCAUCa -3'
miRNA:   3'- -CGUGCCGCg---UUGCuuGGAcAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27336 0.75 0.276518
Target:  5'- -aGCGGCGCGGCGAACUgccGaUGCAUCa -3'
miRNA:   3'- cgUGCCGCGUUGCUUGGa--CaGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.