miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12194 3' -54.7 NC_003309.1 + 27266 0.67 0.678167
Target:  5'- aCGCGGCGUuuUGAgaaucgcaGCCU-UCGCACUg -3'
miRNA:   3'- cGUGCCGCGuuGCU--------UGGAcAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27207 0.66 0.731842
Target:  5'- -aGCGGCGCAGCcacgcuGCCguugauUCGCGCg -3'
miRNA:   3'- cgUGCCGCGUUGcu----UGGac----AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 27165 0.66 0.77306
Target:  5'- --cCGGCGCGccgGCGuuGACCgUGcCGCGCUg -3'
miRNA:   3'- cguGCCGCGU---UGC--UUGG-ACaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 22427 0.68 0.611328
Target:  5'- aGCGCGGCGCG-CGAgaucuuGCCcaacgcuucggcaUGcCGCugCg -3'
miRNA:   3'- -CGUGCCGCGUuGCU------UGG-------------ACaGCGugG- -5'
12194 3' -54.7 NC_003309.1 + 22228 0.69 0.60147
Target:  5'- aGCGCGGCGUuucACGAGaCCcGgcaGCACUc -3'
miRNA:   3'- -CGUGCCGCGu--UGCUU-GGaCag-CGUGG- -5'
12194 3' -54.7 NC_003309.1 + 19915 0.67 0.721261
Target:  5'- cCGCGGCGCucagcagguuCGAGCUcGaUCGCugCu -3'
miRNA:   3'- cGUGCCGCGuu--------GCUUGGaC-AGCGugG- -5'
12194 3' -54.7 NC_003309.1 + 18465 0.68 0.667257
Target:  5'- uGCACGGCuuCGAC-AGCCUGcUGUACUg -3'
miRNA:   3'- -CGUGCCGc-GUUGcUUGGACaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 17779 0.67 0.710591
Target:  5'- aUACGGCGCAcACGGAUCaGccagccguuuuUCGCGCg -3'
miRNA:   3'- cGUGCCGCGU-UGCUUGGaC-----------AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 17293 0.66 0.752696
Target:  5'- uCGCGcGCGCAAuCGAAUgcagaCUGUCGgGCg -3'
miRNA:   3'- cGUGC-CGCGUU-GCUUG-----GACAGCgUGg -5'
12194 3' -54.7 NC_003309.1 + 16850 0.7 0.494692
Target:  5'- --cCGGaGCAauGCGAAUCUcGUCGCGCCc -3'
miRNA:   3'- cguGCCgCGU--UGCUUGGA-CAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 16775 0.7 0.505034
Target:  5'- aCACGGCG-AACGugagGCCgccGUCGCGCg -3'
miRNA:   3'- cGUGCCGCgUUGCu---UGGa--CAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 16298 0.66 0.742324
Target:  5'- aCGCcGCGCucAGCGAgauACCaGUCGCGCa -3'
miRNA:   3'- cGUGcCGCG--UUGCU---UGGaCAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 16203 0.67 0.678167
Target:  5'- gGC-CGGCGCGAacuCGcACCaGUCGUcgacGCCg -3'
miRNA:   3'- -CGuGCCGCGUU---GCuUGGaCAGCG----UGG- -5'
12194 3' -54.7 NC_003309.1 + 14571 0.68 0.667257
Target:  5'- aGCgACGcuuGCGU-AUGAAgcCCUGUUGCACCg -3'
miRNA:   3'- -CG-UGC---CGCGuUGCUU--GGACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 12764 0.72 0.415855
Target:  5'- gGCAUuGCGgAACGAACUcGUCaGCGCCu -3'
miRNA:   3'- -CGUGcCGCgUUGCUUGGaCAG-CGUGG- -5'
12194 3' -54.7 NC_003309.1 + 11990 0.68 0.667257
Target:  5'- uGCcCGcGCGCGGC-AGCCgcgGcgCGCGCCg -3'
miRNA:   3'- -CGuGC-CGCGUUGcUUGGa--Ca-GCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 11759 0.67 0.700922
Target:  5'- cGCcCGGCGaucagccccgccauGCGGACCUGcgcgucguUCGCGCUc -3'
miRNA:   3'- -CGuGCCGCgu------------UGCUUGGAC--------AGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 11300 0.66 0.77306
Target:  5'- cGgACGGCGCAuc--GCCaaacGUCGgCACCa -3'
miRNA:   3'- -CgUGCCGCGUugcuUGGa---CAGC-GUGG- -5'
12194 3' -54.7 NC_003309.1 + 10725 0.72 0.425292
Target:  5'- uGCGCGaGCGCgAGCGaAGCCUcggCGCGCUc -3'
miRNA:   3'- -CGUGC-CGCG-UUGC-UUGGAca-GCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 10649 0.68 0.612424
Target:  5'- cGUACGGCauGCccGCGAugCg--CGCGCCg -3'
miRNA:   3'- -CGUGCCG--CGu-UGCUugGacaGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.