miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12194 3' -54.7 NC_003309.1 + 7749 0.72 0.415855
Target:  5'- cGC-CGGUGCGACGccgagauACCccuUCGCACCa -3'
miRNA:   3'- -CGuGCCGCGUUGCu------UGGac-AGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 12764 0.72 0.415855
Target:  5'- gGCAUuGCGgAACGAACUcGUCaGCGCCu -3'
miRNA:   3'- -CGUGcCGCgUUGCUUGGaCAG-CGUGG- -5'
12194 3' -54.7 NC_003309.1 + 32958 0.72 0.406547
Target:  5'- gGCGCGagaGCGCGACGAcCCUGagcugaUCGCGgCa -3'
miRNA:   3'- -CGUGC---CGCGUUGCUuGGAC------AGCGUgG- -5'
12194 3' -54.7 NC_003309.1 + 8930 0.74 0.312471
Target:  5'- uGCACGGgGCcgAACGccuccgcGACCgcgGUCGCAUCg -3'
miRNA:   3'- -CGUGCCgCG--UUGC-------UUGGa--CAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 1779 0.75 0.276518
Target:  5'- cCGCGGCGCAACGcagaaguaauGCCgccgcccgucgaUGUCGUGCCa -3'
miRNA:   3'- cGUGCCGCGUUGCu---------UGG------------ACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27336 0.75 0.276518
Target:  5'- -aGCGGCGCGGCGAACUgccGaUGCAUCa -3'
miRNA:   3'- cgUGCCGCGUUGCUUGGa--CaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 39962 0.78 0.172337
Target:  5'- uCGCGGCGCGcuuguCGAgcACCUGUUGCGCg -3'
miRNA:   3'- cGUGCCGCGUu----GCU--UGGACAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 47491 0.79 0.150348
Target:  5'- -gGCGGCGCAGCGAcACCU-UCGcCGCCg -3'
miRNA:   3'- cgUGCCGCGUUGCU-UGGAcAGC-GUGG- -5'
12194 3' -54.7 NC_003309.1 + 31701 0.67 0.699845
Target:  5'- gGCuCGGCGCGACGAucgugaaucagGCCgagGcCG-ACCg -3'
miRNA:   3'- -CGuGCCGCGUUGCU-----------UGGa--CaGCgUGG- -5'
12194 3' -54.7 NC_003309.1 + 27165 0.66 0.77306
Target:  5'- --cCGGCGCGccgGCGuuGACCgUGcCGCGCUg -3'
miRNA:   3'- cguGCCGCGU---UGC--UUGG-ACaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 11300 0.66 0.77306
Target:  5'- cGgACGGCGCAuc--GCCaaacGUCGgCACCa -3'
miRNA:   3'- -CgUGCCGCGUugcuUGGa---CAGC-GUGG- -5'
12194 3' -54.7 NC_003309.1 + 27926 0.66 0.762945
Target:  5'- gGCAC-GCGCAAUuGAUCcGUCGUugCu -3'
miRNA:   3'- -CGUGcCGCGUUGcUUGGaCAGCGugG- -5'
12194 3' -54.7 NC_003309.1 + 17293 0.66 0.752696
Target:  5'- uCGCGcGCGCAAuCGAAUgcagaCUGUCGgGCg -3'
miRNA:   3'- cGUGC-CGCGUU-GCUUG-----GACAGCgUGg -5'
12194 3' -54.7 NC_003309.1 + 52943 0.66 0.752696
Target:  5'- uGCACGGCuuCAuCGGGC--GUCGUGCCa -3'
miRNA:   3'- -CGUGCCGc-GUuGCUUGgaCAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 16298 0.66 0.742324
Target:  5'- aCGCcGCGCucAGCGAgauACCaGUCGCGCa -3'
miRNA:   3'- cGUGcCGCG--UUGCU---UGGaCAGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 29437 0.66 0.731842
Target:  5'- gGCAUGGaaaGCGgcccaaagcGCGccAACCUGUUGCAUUu -3'
miRNA:   3'- -CGUGCCg--CGU---------UGC--UUGGACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27207 0.66 0.731842
Target:  5'- -aGCGGCGCAGCcacgcuGCCguugauUCGCGCg -3'
miRNA:   3'- cgUGCCGCGUUGcu----UGGac----AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 30146 0.66 0.731842
Target:  5'- cGgACGGCGCAGgGGAUaUG-CGC-CCa -3'
miRNA:   3'- -CgUGCCGCGUUgCUUGgACaGCGuGG- -5'
12194 3' -54.7 NC_003309.1 + 19915 0.67 0.721261
Target:  5'- cCGCGGCGCucagcagguuCGAGCUcGaUCGCugCu -3'
miRNA:   3'- cGUGCCGCGuu--------GCUUGGaC-AGCGugG- -5'
12194 3' -54.7 NC_003309.1 + 1343 0.67 0.710591
Target:  5'- aGCACGGCcCcuCGAugU--UCGCGCCc -3'
miRNA:   3'- -CGUGCCGcGuuGCUugGacAGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.